Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ATN06_RS27735 Genome accession   NZ_CP013274
Coordinates   5300051..5300572 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain CTC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5295051..5305572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS27715 (ATN06_27480) rplI 5296260..5296706 (-) 447 WP_060633062.1 50S ribosomal protein L9 -
  ATN06_RS27720 (ATN06_27485) - 5296703..5298676 (-) 1974 WP_016085351.1 DHH family phosphoesterase -
  ATN06_RS27725 (ATN06_27490) - 5298755..5299690 (-) 936 WP_060633063.1 YybS family protein -
  ATN06_RS27730 (ATN06_27495) rpsR 5299772..5300005 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  ATN06_RS27735 (ATN06_27500) ssbA 5300051..5300572 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  ATN06_RS27740 (ATN06_27505) rpsF 5300599..5300889 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  ATN06_RS27745 (ATN06_27510) ychF 5301081..5302181 (-) 1101 WP_000524667.1 redox-regulated ATPase YchF -
  ATN06_RS27750 (ATN06_27515) - 5302297..5302494 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  ATN06_RS27755 (ATN06_27520) - 5302515..5303396 (-) 882 WP_060633064.1 mechanosensitive ion channel family protein -
  ATN06_RS27760 (ATN06_27525) yyaC 5303655..5304251 (+) 597 WP_060633065.1 spore protease YyaC -
  ATN06_RS27765 (ATN06_27530) spo0J 5304272..5305123 (-) 852 WP_088115962.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=161307 ATN06_RS27735 WP_000981963.1 5300051..5300572(-) (ssbA) [Bacillus thuringiensis strain CTC]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=161307 ATN06_RS27735 WP_000981963.1 5300051..5300572(-) (ssbA) [Bacillus thuringiensis strain CTC]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCGGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment