Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ATN00_RS02745 Genome accession   NZ_CP013264
Coordinates   530280..530861 (+) Length   193 a.a.
NCBI ID   WP_062061819.1    Uniprot ID   A0A0S3EVG6
Organism   Sphingobium baderi strain DE-13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 525280..535861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN00_RS02725 (ATN00_02690) - 526419..527318 (+) 900 WP_062061808.1 DMT family transporter -
  ATN00_RS02730 (ATN00_02695) - 527366..528022 (+) 657 WP_062061811.1 COQ9 family protein -
  ATN00_RS02735 (ATN00_02700) - 528103..528360 (+) 258 WP_062061814.1 FeoA family protein -
  ATN00_RS02740 (ATN00_02705) feoB 528357..530219 (+) 1863 WP_062061817.1 ferrous iron transporter B -
  ATN00_RS02745 (ATN00_02710) ssb 530280..530861 (+) 582 WP_062061819.1 single-stranded DNA-binding protein Machinery gene
  ATN00_RS02750 (ATN00_02715) - 531151..532050 (-) 900 WP_062061822.1 UTP--glucose-1-phosphate uridylyltransferase -
  ATN00_RS02755 (ATN00_02720) - 532143..532580 (-) 438 WP_062068313.1 hypothetical protein -
  ATN00_RS22750 - 532754..532927 (-) 174 WP_082635075.1 DUF1674 domain-containing protein -
  ATN00_RS02760 (ATN00_02725) htpX 533015..533950 (+) 936 WP_197413656.1 zinc metalloprotease HtpX -
  ATN00_RS02765 (ATN00_02730) - 534047..535339 (+) 1293 WP_062068318.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ATN00_RS02770 (ATN00_02735) - 535363..535848 (+) 486 WP_062061825.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 19685.26 Da        Isoelectric Point: 5.0178

>NTDB_id=161253 ATN00_RS02745 WP_062061819.1 530280..530861(+) (ssb) [Sphingobium baderi strain DE-13]
MAGSVNKVILIGNLGADPEVRSFQNGGKVCNIRIATSETWKDRNSGERKERTEWHSVAIFSEGLAGVAERYLRKGSKVYI
EGKLQTRKWQDQSGNDRYTTEVVLQGPSAVLTMLDGAPGGGGQGGGGRSQGGSDWSGGSSGFGGGDYDDFGGGGGNFGGG
GASGGRSQGGSGGGRGSAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=161253 ATN00_RS02745 WP_062061819.1 530280..530861(+) (ssb) [Sphingobium baderi strain DE-13]
ATGGCGGGCTCGGTTAACAAGGTCATTCTGATCGGCAATCTGGGCGCGGACCCGGAAGTCCGCAGCTTCCAGAATGGCGG
CAAGGTGTGCAACATCCGCATCGCGACCTCCGAAACATGGAAGGACCGCAATTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCACAGCGTCGCGATCTTTTCCGAAGGGCTGGCAGGCGTAGCCGAACGCTATCTGCGTAAGGGCAGCAAGGTCTATATC
GAGGGCAAGCTGCAAACCCGCAAATGGCAGGACCAGTCGGGCAACGACCGCTACACCACCGAAGTGGTGCTGCAAGGACC
GAGCGCGGTGCTGACCATGCTGGACGGCGCGCCAGGCGGCGGCGGTCAGGGCGGCGGTGGCCGTTCGCAGGGCGGGAGCG
ACTGGTCCGGCGGTTCGAGCGGCTTTGGCGGCGGCGATTATGACGATTTCGGCGGCGGCGGCGGAAACTTTGGCGGTGGC
GGCGCGAGCGGCGGTCGTTCGCAGGGCGGCAGCGGTGGCGGCCGGGGCAGCGCAGGTGGGCCGAATTTCGACAATGATCT
GGATGATGAAGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S3EVG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.205

100

0.487
  ssb Vibrio cholerae strain A1552

47.917

99.482

0.477
  ssb Neisseria gonorrhoeae MS11

36

100

0.373
  ssb Neisseria meningitidis MC58

36.598

100

0.368

Multiple sequence alignment