Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ATN01_RS02750 Genome accession   NZ_CP013259
Coordinates   577150..577665 (-) Length   171 a.a.
NCBI ID   WP_075433547.1    Uniprot ID   A0A1B2H965
Organism   Buchnera aphidicola (Diuraphis noxia) strain Host: Diuraphis noxia isolate SAM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 572150..582665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN01_RS02730 (ATN01_02695) - 572765..574366 (-) 1602 WP_075433624.1 peptide chain release factor 3 -
  ATN01_RS03215 - 574804..575196 (+) 393 Protein_518 asparaginase domain-containing protein -
  ATN01_RS03220 - 575350..575532 (+) 183 WP_420480888.1 hypothetical protein -
  ATN01_RS02740 (ATN01_02700) - 575593..576174 (-) 582 WP_075433545.1 NfuA family Fe-S biogenesis protein -
  ATN01_RS02745 (ATN01_02705) bioH 576317..577087 (+) 771 WP_075433546.1 pimeloyl-ACP methyl ester esterase BioH -
  ATN01_RS02750 (ATN01_02710) ssb 577150..577665 (-) 516 WP_075433547.1 single-stranded DNA-binding protein Machinery gene
  ATN01_RS02755 (ATN01_02715) dnaB 578160..579557 (+) 1398 WP_075433548.1 replicative DNA helicase -
  ATN01_RS02760 (ATN01_02720) gshB 579766..580755 (+) 990 WP_075433549.1 glutathione synthase -
  ATN01_RS02765 (ATN01_02725) ruvX 580736..581149 (+) 414 WP_075433550.1 Holliday junction resolvase RuvX -
  ATN01_RS02770 (ATN01_02730) - 581278..581862 (+) 585 WP_236854846.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19518.85 Da        Isoelectric Point: 5.8440

>NTDB_id=161234 ATN01_RS02750 WP_075433547.1 577150..577665(-) (ssb) [Buchnera aphidicola (Diuraphis noxia) strain Host: Diuraphis noxia isolate SAM]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEIVVNISGTMQMLGNRNSNLQTVSKNDNNIILPKTKKTEKVDFENQSEKYKSDKDSMNNS
SEIDFDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=161234 ATN01_RS02750 WP_075433547.1 577150..577665(-) (ssb) [Buchnera aphidicola (Diuraphis noxia) strain Host: Diuraphis noxia isolate SAM]
ATGGCAAGTAGAGGTGTTAACAAAGTCATTCTTATTGGACATTTAGGACAAGATCCAGAAGTACGTTATATGCCTAATGG
TAATGCAGTTGTAAATATGACATTAGCAACTTCAGAAAACTGGAAAGATAAAAATACTGGAGAAAACAAAGAAAAAACTG
AGTGGCATAGAATAGTATTATTTGGTAAATTAGCAGAAATTGCAGGTGAATATCTTCGAAAAGGTTCTCAAGTATACATT
GAAGGATCATTGCAAACTAGAAAATGGCAAGATCAAAATGGACTGGAACGTTATACAACAGAAATTGTTGTAAATATTAG
TGGTACGATGCAAATGTTAGGAAATCGTAATTCTAATCTACAAACTGTCTCAAAAAATGATAATAATATTATTTTACCGA
AAACAAAAAAAACAGAAAAAGTAGATTTTGAAAATCAATCTGAAAAATACAAATCCGATAAAGATTCAATGAATAATTCT
TCAGAAATAGATTTTGATGATGAAATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2H965

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.627

100

0.596
  ssb Glaesserella parasuis strain SC1401

63.158

66.667

0.421
  ssb Neisseria meningitidis MC58

59.649

66.667

0.398
  ssb Neisseria gonorrhoeae MS11

59.649

66.667

0.398

Multiple sequence alignment