Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPter91_RS02580 Genome accession   NZ_CP013234
Coordinates   576254..576754 (+) Length   166 a.a.
NCBI ID   WP_061936514.1    Uniprot ID   A0A127PYP5
Organism   Collimonas pratensis strain Ter91     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 571254..581754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter91_RS02570 (CPter91_0553) - 572434..574371 (-) 1938 WP_082792556.1 S53 family peptidase -
  CPter91_RS02575 (CPter91_0554) - 575002..576198 (+) 1197 WP_099047263.1 MFS transporter -
  CPter91_RS02580 (CPter91_0555) ssb 576254..576754 (+) 501 WP_061936514.1 single-stranded DNA-binding protein Machinery gene
  CPter91_RS02585 (CPter91_0556) - 577131..577427 (+) 297 WP_061936516.1 DUF2917 domain-containing protein -
  CPter91_RS02590 (CPter91_0557) - 577431..578603 (+) 1173 WP_231880031.1 hypothetical protein -
  CPter91_RS02595 (CPter91_0558) - 578658..579290 (+) 633 WP_061936519.1 GNAT family N-acetyltransferase -
  CPter91_RS02600 (CPter91_0559) - 579287..580489 (+) 1203 WP_061936522.1 M20/M25/M40 family metallo-hydrolase -
  CPter91_RS02605 (CPter91_0560) - 580486..581028 (+) 543 WP_061936525.1 cysteine hydrolase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18110.16 Da        Isoelectric Point: 7.0169

>NTDB_id=160893 CPter91_RS02580 WP_061936514.1 576254..576754(+) (ssb) [Collimonas pratensis strain Ter91]
MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNSGEKKELTEWHRITFYRKLAEIAGQYLKKGSQIYVEG
RLQTRKWQDKDGAERYTTEIIADTMQMLGSRQGAGGSAPMDDGGGYNSAPPARQNTGSAPQAAASRPAPASRPAPNFSDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=160893 CPter91_RS02580 WP_061936514.1 576254..576754(+) (ssb) [Collimonas pratensis strain Ter91]
ATGGCATCGGTCAATAAAGTCATCATCGTCGGCAATCTCGGCCGCGACCCGGAAACGCGCTACATGCCAAACGGTGAAGC
AGTCACCAACATTGCCGTTGCCACCACGGAAAGCTGGAAAGACAAGAACAGCGGCGAGAAAAAAGAATTAACCGAGTGGC
ACCGCATCACCTTCTACCGCAAGCTGGCGGAAATCGCCGGCCAGTACCTGAAGAAGGGTTCGCAGATCTACGTCGAAGGC
CGCCTGCAGACTCGCAAATGGCAGGACAAGGACGGCGCCGAGCGCTACACCACTGAAATCATCGCCGACACCATGCAGAT
GCTCGGCAGCCGTCAAGGTGCAGGCGGCAGTGCGCCTATGGACGATGGCGGCGGCTACAACAGCGCGCCGCCGGCACGTC
AGAACACCGGCAGCGCACCGCAAGCAGCCGCTTCCCGTCCAGCACCGGCTTCCCGTCCGGCGCCGAATTTTTCGGATATG
GATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127PYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.552

100

0.59
  ssb Vibrio cholerae strain A1552

53.846

100

0.59
  ssb Neisseria gonorrhoeae MS11

53.672

100

0.572
  ssb Neisseria meningitidis MC58

54.023

100

0.566

Multiple sequence alignment