Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFter6_RS03285 Genome accession   NZ_CP013232
Coordinates   778626..779123 (+) Length   165 a.a.
NCBI ID   WP_061538709.1    Uniprot ID   -
Organism   Collimonas fungivorans strain Ter6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 773626..784123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFter6_RS03275 (CFter6_0689) uvrA 774264..777137 (-) 2874 WP_061538707.1 excinuclease ABC subunit UvrA -
  CFter6_RS03280 (CFter6_0690) - 777338..778579 (+) 1242 WP_061538708.1 MFS transporter -
  CFter6_RS03285 (CFter6_0691) ssb 778626..779123 (+) 498 WP_061538709.1 single-stranded DNA-binding protein Machinery gene
  CFter6_RS03290 - 779382..779705 (-) 324 Protein_680 helix-turn-helix domain-containing protein -
  CFter6_RS26675 - 779941..780795 (+) 855 WP_082814573.1 YopT-type cysteine protease domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18078.16 Da        Isoelectric Point: 7.0169

>NTDB_id=160854 CFter6_RS03285 WP_061538709.1 778626..779123(+) (ssb) [Collimonas fungivorans strain Ter6]
MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNSGEKKELTEWHRITFYRKLAEIAGQYLKKGSQIYIEG
RLQTRKWQDKDGAERYTTEIIADTMQMLGSRQGAGGSAPMDDGGGYNSAPPARQQNASAPAAPARQAPASRPAPNFSDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=160854 CFter6_RS03285 WP_061538709.1 778626..779123(+) (ssb) [Collimonas fungivorans strain Ter6]
ATGGCATCGGTCAATAAAGTCATCATCGTCGGCAATCTCGGCCGCGACCCGGAAACACGCTACATGCCGAACGGCGAAGC
CGTCACCAACATTGCCGTGGCCACCACGGAAAGCTGGAAAGACAAGAACAGCGGCGAGAAAAAAGAATTAACCGAGTGGC
ACCGCATTACCTTCTATCGCAAGCTGGCGGAGATCGCCGGCCAGTACCTGAAAAAGGGTTCGCAGATCTACATCGAAGGC
CGCCTGCAGACGCGCAAGTGGCAAGACAAGGATGGCGCCGAGCGTTACACCACCGAAATCATCGCCGACACCATGCAGAT
GCTCGGCAGCCGCCAGGGCGCCGGCGGCAGCGCGCCTATGGACGATGGCGGCGGCTACAACAGCGCACCGCCGGCACGCC
AGCAAAACGCCAGCGCCCCGGCAGCTCCGGCCCGCCAGGCGCCCGCTTCGCGTCCGGCGCCGAATTTCTCGGATATGGAT
GACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

56.497

100

0.606
  ssb Vibrio cholerae strain A1552

54.396

100

0.6
  ssb Neisseria gonorrhoeae MS11

55.367

100

0.594
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576

Multiple sequence alignment