Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   HSISS4_RS09175 Genome accession   NZ_CP013216
Coordinates   1998922..1999632 (+) Length   236 a.a.
NCBI ID   WP_002885834.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1993922..2004632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS09165 (HSISS4_01785) treC 1995136..1996761 (-) 1626 WP_021144701.1 alpha,alpha-phosphotrehalase -
  HSISS4_RS09170 (HSISS4_01786) treP 1996816..1998765 (-) 1950 WP_021144702.1 PTS system trehalose-specific EIIBC component -
  HSISS4_RS09175 (HSISS4_01787) treR 1998922..1999632 (+) 711 WP_002885834.1 trehalose operon repressor Regulator
  HSISS4_RS09180 (HSISS4_01788) - 1999686..2000246 (-) 561 WP_021144703.1 TIGR01440 family protein -
  HSISS4_RS09975 - 2000262..2000600 (-) 339 WP_014635137.1 hypothetical protein -
  HSISS4_RS09185 (HSISS4_01789) - 2000633..2000989 (-) 357 WP_021144704.1 hypothetical protein -
  HSISS4_RS09190 (HSISS4_01790) - 2001540..2002343 (-) 804 WP_021144705.1 FxLYD domain-containing protein -
  HSISS4_RS09195 (HSISS4_01791) - 2002477..2003358 (-) 882 WP_021144706.1 hypothetical protein -
  HSISS4_RS10165 (HSISS4_01792) - 2003535..2003657 (-) 123 WP_021144707.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27370.02 Da        Isoelectric Point: 6.8431

>NTDB_id=160730 HSISS4_RS09175 WP_002885834.1 1998922..1999632(+) (treR) [Streptococcus salivarius strain HSISS4]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQIWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=160730 HSISS4_RS09175 WP_002885834.1 1998922..1999632(+) (treR) [Streptococcus salivarius strain HSISS4]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTCCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGTTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTATCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGATCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602

Multiple sequence alignment