Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HSISS4_RS07515 Genome accession   NZ_CP013216
Coordinates   1664187..1664882 (-) Length   231 a.a.
NCBI ID   WP_021143743.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1659187..1669882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS07500 (HSISS4_01464) - 1659998..1660543 (-) 546 WP_013991031.1 GNAT family N-acetyltransferase -
  HSISS4_RS07505 (HSISS4_01465) - 1660609..1661871 (-) 1263 WP_021143745.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HSISS4_RS07510 (HSISS4_01466) comEC/celB 1661957..1664197 (-) 2241 WP_021143744.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HSISS4_RS07515 (HSISS4_01467) comEA 1664187..1664882 (-) 696 WP_021143743.1 helix-hairpin-helix domain-containing protein Machinery gene
  HSISS4_RS07520 (HSISS4_01468) - 1664990..1665745 (-) 756 WP_021143742.1 lysophospholipid acyltransferase family protein -
  HSISS4_RS07525 (HSISS4_01469) - 1665874..1666809 (+) 936 WP_021143741.1 polysaccharide deacetylase family protein -
  HSISS4_RS07530 (HSISS4_01470) - 1666859..1667623 (+) 765 WP_059749235.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HSISS4_RS07535 (HSISS4_01471) - 1667627..1667896 (+) 270 WP_021143739.1 GIY-YIG nuclease family protein -
  HSISS4_RS07540 (HSISS4_01472) - 1667953..1669539 (-) 1587 WP_008535313.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24504.46 Da        Isoelectric Point: 4.6690

>NTDB_id=160716 HSISS4_RS07515 WP_021143743.1 1664187..1664882(-) (comEA) [Streptococcus salivarius strain HSISS4]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKEGSKSLTEVSSQSKTEESEKDK
SKVTVDVKGAVANPGVYTLKASARVTDAIKAAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTSQVSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESIYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=160716 HSISS4_RS07515 WP_021143743.1 1664187..1664882(-) (comEA) [Streptococcus salivarius strain HSISS4]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAAGAAGGGTCAAAATCACTTACTGAAGTGTCTTCTCAGTCAAAGACTGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAGGGGGCTGTGGCCAATCCAGGTGTTTATACCTTAAAAGCAAGCGCTAGGGTGACTGA
CGCCATCAAAGCAGCTGGGGGAATGACCGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTAGCAACTAAGGATGAAAACCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGTGTCTGACAAAGGA
GGACAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACGTTAGATAAAATCAGAGAGTCCATCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(168-228)

SLBB domain (SLBB)

(85-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

89.177

100

0.892
  comEA/celA/cilE Streptococcus mitis SK321

40.435

99.567

0.403
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40.175

99.134

0.398
  comEA Latilactobacillus sakei subsp. sakei 23K

34.855

100

0.364

Multiple sequence alignment