Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BC375_RS00640 Genome accession   NZ_CP016610
Coordinates   149350..150024 (-) Length   224 a.a.
NCBI ID   WP_011097508.1    Uniprot ID   Q87F21
Organism   Xylella fastidiosa strain Salento-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 144350..155024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC375_RS00625 (BC375_00595) - 145857..146618 (-) 762 WP_046417738.1 SDR family NAD(P)-dependent oxidoreductase -
  BC375_RS00630 (BC375_00600) - 146753..147499 (-) 747 WP_023907201.1 SPOR domain-containing protein -
  BC375_RS00635 (BC375_00605) argS 147539..149227 (-) 1689 WP_046418242.1 arginine--tRNA ligase -
  BC375_RS00640 (BC375_00610) radC 149350..150024 (-) 675 WP_011097508.1 DNA repair protein RadC Machinery gene
  BC375_RS00645 (BC375_00615) coaBC 150122..151351 (+) 1230 WP_046417741.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BC375_RS00650 (BC375_00620) dut 151348..151815 (+) 468 WP_023906060.1 dUTP diphosphatase -
  BC375_RS12500 - 151930..154191 (+) 2262 WP_234048994.1 phosphomannomutase/phosphoglucomutase -
  BC375_RS00660 (BC375_00630) - 154205..154885 (-) 681 WP_046417746.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24590.10 Da        Isoelectric Point: 8.2711

>NTDB_id=160716 BC375_RS00640 WP_011097508.1 149350..150024(-) (radC) [Xylella fastidiosa strain Salento-2]
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARAC
KLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRR
ALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=160716 BC375_RS00640 WP_011097508.1 149350..150024(-) (radC) [Xylella fastidiosa strain Salento-2]
ATGCACATCAACAACTGGCCTACGCATGAACGACCACGTGAAAAACTGCTGGCCCACGGCGCCGCCACACTTTCGGATGC
AGAACTGCTCGCAATCTTCCTAGGCTCTGGCCTACGCGGTCATGACGCCGTGCAAACTGCACGTAACCTGCTGCACACTC
ATGGTCCACTACGAGAACTACTAGACCGACCTCCAGGTGATCTCATGCGCCTGCCCGGGTTAGGTCTGGCACGCGCATGC
AAACTCACCGCAGCACTGGAATTAAGCACCCGCCACCTGGCAGCCGCCCTGCAACGCGGCGCAAGTATCCACGATCCAAT
CAGCGCCGGACGCTATTTCGCACAGCGCCTACGAGCGAATCCAAATGAAGTCTTCGCCGTCCTATTTTTAGACAATAGGC
ACCGCGCGATCAGCTTTGAAGAATTGTTCCACGGCACCATCAACGGTGCCGAAGTACATCCACGCGAAGTCGTACGACGC
GCATTAACTCTGAACGCAGCAGCAGTGATCGTCGGCCATAATCACCCATCCGGTAACCGCGAACCATCACCAGCCGACCA
AATGATCACCCAACGCTTAAAAAACGCCTTAGACCTCATCGACGTGCGCCTAGTCGACCACTTCGTGATTGGCGACGGTG
CGCCGGTCTCATTCGCCGAACATGGCTGGCTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87F21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.662

95.089

0.415

Multiple sequence alignment