Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ASL14_RS12250 Genome accession   NZ_CP013203
Coordinates   2625917..2626408 (+) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus sp. IHB B 3084     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2620917..2631408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASL14_RS12210 (ASL14_11970) - 2621056..2622096 (+) 1041 WP_134910485.1 IS630 family transposase -
  ASL14_RS12215 (ASL14_11975) dinD 2622091..2622936 (-) 846 WP_134911771.1 DNA damage-inducible protein D -
  ASL14_RS12220 (ASL14_11980) - 2623135..2623365 (-) 231 WP_134911772.1 helix-turn-helix transcriptional regulator -
  ASL14_RS12225 (ASL14_11985) - 2623559..2623789 (-) 231 WP_134911773.1 helix-turn-helix transcriptional regulator -
  ASL14_RS12230 (ASL14_11990) - 2623942..2624304 (+) 363 WP_134911774.1 hypothetical protein -
  ASL14_RS12235 (ASL14_11995) - 2624385..2624702 (-) 318 WP_025683697.1 hypothetical protein -
  ASL14_RS12240 (ASL14_12000) - 2625070..2625264 (-) 195 WP_025683698.1 YjzC family protein -
  ASL14_RS12245 (ASL14_12005) rpsF 2625583..2625867 (+) 285 WP_044648139.1 30S ribosomal protein S6 -
  ASL14_RS12250 (ASL14_12010) ssbA 2625917..2626408 (+) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  ASL14_RS12255 (ASL14_12015) rpsR 2626430..2626702 (+) 273 WP_013312800.1 30S ribosomal protein S18 -
  ASL14_RS12260 (ASL14_12020) - 2627239..2628975 (+) 1737 WP_134911775.1 ABC transporter substrate-binding protein -
  ASL14_RS12265 (ASL14_12025) - 2629047..2630009 (+) 963 WP_044648137.1 ABC transporter permease -
  ASL14_RS12270 (ASL14_12030) opp4C 2630021..2630944 (+) 924 WP_134911776.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=160640 ASL14_RS12250 WP_013312801.1 2625917..2626408(+) (ssbA) [Paenibacillus sp. IHB B 3084]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=160640 ASL14_RS12250 WP_013312801.1 2625917..2626408(+) (ssbA) [Paenibacillus sp. IHB B 3084]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCCTGGAATCTAATCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374

Multiple sequence alignment