Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BB405_RS18845 Genome accession   NZ_CP016546
Coordinates   3726953..3727690 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain O177:H21     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3721953..3732690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB405_RS18815 (BB405_18815) yfiL 3722111..3722476 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  BB405_RS18820 (BB405_18820) aroF 3722686..3723756 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BB405_RS18825 (BB405_18825) tyrA 3723767..3724888 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BB405_RS18830 (BB405_18830) pheA 3724931..3726091 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  BB405_RS31925 pheL 3726190..3726237 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BB405_RS18835 (BB405_18835) raiA 3726341..3726682 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BB405_RS18845 (BB405_18845) comL 3726953..3727690 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BB405_RS18850 (BB405_18850) rluD 3727825..3728805 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BB405_RS18855 (BB405_18855) yfiH 3728802..3729533 (+) 732 WP_029402462.1 purine nucleoside phosphorylase YfiH -
  BB405_RS18860 (BB405_18860) clpC 3729663..3732236 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=160640 BB405_RS18845 WP_000197686.1 3726953..3727690(-) (comL) [Escherichia coli strain O177:H21]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=160640 BB405_RS18845 WP_000197686.1 3726953..3727690(-) (comL) [Escherichia coli strain O177:H21]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment