Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACA40_RS03660 Genome accession   NZ_CP013183
Coordinates   828369..829706 (-) Length   445 a.a.
NCBI ID   WP_057406283.1    Uniprot ID   A0AB74AAG4
Organism   Pseudomonas syringae pv. lapsa strain ATCC 10859     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 823369..834706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA40_RS03645 (ACA40_03645) - 823491..826694 (+) 3204 WP_057406286.1 pilus assembly protein -
  ACA40_RS03650 (ACA40_03650) - 826706..827113 (+) 408 WP_057406285.1 type IV pilin protein -
  ACA40_RS03655 (ACA40_03655) thiO 827139..828242 (+) 1104 WP_057406284.1 glycine oxidase ThiO -
  ACA40_RS03660 (ACA40_03660) pilR 828369..829706 (-) 1338 WP_057406283.1 sigma-54-dependent transcriptional regulator Regulator
  ACA40_RS03665 (ACA40_03665) pilS 829709..831301 (-) 1593 WP_016567133.1 sensor histidine kinase Regulator
  ACA40_RS03670 (ACA40_03670) - 831291..831530 (-) 240 WP_032607804.1 PP0621 family protein -
  ACA40_RS03675 (ACA40_03675) - 831650..832672 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  ACA40_RS03680 (ACA40_03680) rluD 832822..833784 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACA40_RS03685 (ACA40_03685) pgeF 833781..834509 (+) 729 WP_024648765.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49697.65 Da        Isoelectric Point: 6.2986

>NTDB_id=160429 ACA40_RS03660 WP_057406283.1 828369..829706(-) (pilR) [Pseudomonas syringae pv. lapsa strain ATCC 10859]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLVREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=160429 ACA40_RS03660 WP_057406283.1 828369..829706(-) (pilR) [Pseudomonas syringae pv. lapsa strain ATCC 10859]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCACGTAACGTTGCCGAAGCCCATGACTGGCTGGTCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GACTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGCCCGCGCATCGACAAACCTTT
CATCCCGGTGAATTGCGGCGCCATTCCTTCCGAGCTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAAGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCGGGTCGGTTCCGGCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTACCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCAGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCTCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.252

99.775

0.771
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

40.049

91.461

0.366

Multiple sequence alignment