Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACA40_RS03665 Genome accession   NZ_CP013183
Coordinates   829709..831301 (-) Length   530 a.a.
NCBI ID   WP_016567133.1    Uniprot ID   A0AB74AAW4
Organism   Pseudomonas syringae pv. lapsa strain ATCC 10859     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 824709..836301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA40_RS03650 (ACA40_03650) - 826706..827113 (+) 408 WP_057406285.1 type IV pilin protein -
  ACA40_RS03655 (ACA40_03655) thiO 827139..828242 (+) 1104 WP_057406284.1 glycine oxidase ThiO -
  ACA40_RS03660 (ACA40_03660) pilR 828369..829706 (-) 1338 WP_057406283.1 sigma-54-dependent transcriptional regulator Regulator
  ACA40_RS03665 (ACA40_03665) pilS 829709..831301 (-) 1593 WP_016567133.1 sensor histidine kinase Regulator
  ACA40_RS03670 (ACA40_03670) - 831291..831530 (-) 240 WP_032607804.1 PP0621 family protein -
  ACA40_RS03675 (ACA40_03675) - 831650..832672 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  ACA40_RS03680 (ACA40_03680) rluD 832822..833784 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACA40_RS03685 (ACA40_03685) pgeF 833781..834509 (+) 729 WP_024648765.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58030.93 Da        Isoelectric Point: 6.8620

>NTDB_id=160430 ACA40_RS03665 WP_016567133.1 829709..831301(-) (pilS) [Pseudomonas syringae pv. lapsa strain ATCC 10859]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQSALHLLSQEQLVGQMID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSTAPN
QAIHVDISPGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNEPRSDLPTLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=160430 ACA40_RS03665 WP_016567133.1 829709..831301(-) (pilS) [Pseudomonas syringae pv. lapsa strain ATCC 10859]
GTGACCGCTGATTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTGCGGCTGTACCACCTTTATCGACTGACCAT
CGGCGTCGTACTGGTGCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGATGCGATCATGCTCTCCGCGCTGTTCTACGCAGCGGGCGGGCCTTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTCTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCTTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAAGTCAGCGAGGTACTGGCCGAACAGCG
CGCAGCGGATGTCGACAGCCTCGAGGCACTCAACGCACTCATTTTGCAGCGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAATCACCAGGTGCTGCTGGCCAACCAGAGTGCCTTGCACCTGCTGAGCCAGGAGCAACTGGTCGGCCAGATGATCGAC
ACCTGCTCGCCGCAGCTGGTTGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGTATCACCACCGC
CCCCGTCGGGCTGGTACTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCATCAGGCGCAGCAGCTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAATCCGCTGGGTGCAGTCAGTCATGCGGCTCAACTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGGCGCATTGATCGGGTCATCGAAAATGTCCTGCAGCTGTCGCGCAGACGCG
AGGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGTTCCACAGCGCCCAAT
CAGGCGATTCATGTCGACATCAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAGTTGACGCAAATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTGCACAATGAACCGA
GAAGCGATTTGCCTACGCTGGAAGTGCTGGACGATGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATCTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCATCT
GGAATATGCGCCCCGCCCCACGGGTGGCAGCTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611

Multiple sequence alignment