Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SA40TW_RS08080 Genome accession   NZ_CP013182
Coordinates   1612334..1613020 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA40TW     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607334..1618020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40TW_RS08060 (SA40TW_07725) rpsT 1608248..1608499 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SA40TW_RS08065 (SA40TW_07730) holA 1608544..1609518 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  SA40TW_RS08070 (SA40TW_07735) comEC 1609575..1611776 (-) 2202 WP_000967504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SA40TW_RS08075 (SA40TW_07740) - 1611781..1612242 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SA40TW_RS08080 (SA40TW_07745) comEA 1612334..1613020 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  SA40TW_RS08085 (SA40TW_07750) - 1613060..1613776 (-) 717 WP_000942456.1 class I SAM-dependent DNA methyltransferase -
  SA40TW_RS08090 (SA40TW_07755) rsfS 1613779..1614132 (-) 354 WP_001088020.1 ribosome silencing factor -
  SA40TW_RS08095 (SA40TW_07760) yqeK 1614133..1614717 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SA40TW_RS08100 (SA40TW_07765) nadD 1614707..1615276 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SA40TW_RS08105 (SA40TW_07770) yhbY 1615279..1615569 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  SA40TW_RS08110 (SA40TW_07775) aroE 1615573..1616379 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  SA40TW_RS08115 (SA40TW_07780) yqeH 1616393..1617493 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=160404 SA40TW_RS08080 WP_078055782.1 1612334..1613020(-) (comEA) [Staphylococcus aureus strain SA40TW]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=160404 SA40TW_RS08080 WP_078055782.1 1612334..1613020(-) (comEA) [Staphylococcus aureus strain SA40TW]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982

Multiple sequence alignment