Detailed information NTG0160375

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: A4W81_RS07975
• Genome accession: NZ_CP016465
• Coordinates: 1536503..1537510 (-)
• Length: 335 a.a.
• NCBI ID: WP_112220934.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1531503..1542510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W81_RS07955 (A4W81_07825)	argF	1532425..1533441 (-)	1017	WP_011374080.1	ornithine carbamoyltransferase	-
A4W81_RS07960 (A4W81_07830)	arcA	1533467..1534702 (-)	1236	WP_011374079.1	arginine deiminase	-
A4W81_RS07965 (A4W81_07835)	-	1534909..1535430 (-)	522	WP_076631958.1	GNAT family protein	-
A4W81_RS07970 (A4W81_07840)	queA	1535457..1536488 (-)	1032	WP_076631957.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
A4W81_RS07975 (A4W81_07845)	ruvB	1536503..1537510 (-)	1008	WP_112220934.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
A4W81_RS07980 (A4W81_07850)	ruvA	1537523..1538134 (-)	612	WP_011374075.1	Holliday junction branch migration protein RuvA	Machinery gene
A4W81_RS07985 (A4W81_07855)	-	1538545..1539108 (-)	564	WP_011374074.1	TIGR00730 family Rossman fold protein	-
A4W81_RS07990 (A4W81_07860)	-	1539121..1539666 (-)	546	WP_011374073.1	Maf family protein	-
A4W81_RS07995 (A4W81_07865)	hexB	1539666..1541624 (-)	1959	WP_112220933.1	DNA mismatch repair endonuclease MutL	Machinery gene

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37295.74 Da
• Isoelectric Point: 4.8413

>NTDB_id=160375 A4W81_RS07975 WP_112220934.1 1536503..1537510(-) (ruvB) [Latilactobacillus sakei strain TMW 1.3]
MADERIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPPGLGKTTLAMVIANELQ
VQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEIHRLPKMVEELLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGA
TTRAGLLSAPLRDRFGIVEHMAYYTEADLMDIVQRSAGVFNMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQN
TIDQAIADHALSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEVYEPYLLQIGFLKRTQRGRMV
TPTGYAHLGMPYPEK

Nucleotide

• Length: 1008 bp

>NTDB_id=160375 A4W81_RS07975 WP_112220934.1 1536503..1537510(-) (ruvB) [Latilactobacillus sakei strain TMW 1.3]
ATGGCAGATGAGCGAATTGTTTCAGCCGAAAACGATGATTTTGCTGAAGCAAGCATTGAAAAAACATTGCGGCCACAAGT
CCTTGCACAATATATCGGTCAAGATCGGGTTAAAAATGAATTAGCGGTCTATATTGAAGCGGCCAAAAAACGGGAAGAGT
CCCTCGATCACGTTTTACTTTATGGCCCACCGGGTTTGGGGAAAACCACGTTAGCGATGGTGATTGCTAACGAGTTGCAA
GTCCAGATTCGAACGACAAGTGGCCCCGCAATCGAGCGGCCTGGGGATTTAGTGGCGTTATTAAACGAGTTACAACCCGG
GGATGTTTTATTTATTGATGAAATTCATCGCTTACCTAAGATGGTTGAAGAATTACTTTATTCAGCGATGGAAGATTTCT
ACATCGATATTGTGGTTGGTCAAGGGCCCACCGCACATCCCGTCCATTTTCCATTACCACCATTCACATTGATTGGCGCG
ACGACGCGGGCGGGCTTATTGTCTGCGCCATTGCGAGATCGTTTCGGAATTGTGGAACACATGGCTTACTACACGGAAGC
TGATTTGATGGACATTGTGCAACGCTCAGCCGGCGTCTTTAACATGTCGATTGTGCCAGATGGCGCGTTAGAAATCGCAC
GTCGCTCGCGAGGGACGCCGCGGATTGCCAATCGGTTGTTGAAACGAACTCGAGATTACGCACAAGTGGCTGACCAAAAT
ACGATTGATCAGGCGATTGCTGATCACGCATTAAGTCAGCTGCAAGTTGATATTCGGGGCTTAGACGGTGTCGATCGCAA
AATCCTCCAGATGATGATTGATTATTATCAAGGCGGACCAGTCGGTTTAAAAACCATTGCCGCCAATATTGGTGAAGAAA
ACGAAACAATTGAAGAAGTTTACGAGCCTTATTTACTGCAAATTGGCTTTTTAAAACGAACGCAAAGAGGCCGGATGGTA
ACGCCGACTGGTTATGCCCATTTAGGCATGCCTTATCCAGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (260-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	64.35	98.806	0.636
ruvB	Streptococcus pneumoniae R6	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae D39	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae TIGR4	64.375	95.522	0.615
ruvB	Synechocystis sp. PCC 6803	57.962	93.731	0.543
ruvB	Helicobacter pylori 26695	51.829	97.91	0.507