Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BAY21_RS05270 | Genome accession | NZ_CP016439 |
| Coordinates | 992970..993971 (+) | Length | 333 a.a. |
| NCBI ID | WP_002948618.1 | Uniprot ID | Q5M2B1 |
| Organism | Streptococcus thermophilus strain CS8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 987970..998971
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAY21_RS05250 (BAY21_05250) | - | 988652..989944 (+) | 1293 | WP_002948622.1 | adenylosuccinate synthase | - |
| BAY21_RS05255 (BAY21_05255) | - | 990226..990660 (+) | 435 | WP_002948621.1 | low molecular weight protein-tyrosine-phosphatase | - |
| BAY21_RS05260 (BAY21_05260) | - | 990657..991067 (+) | 411 | WP_002948620.1 | membrane protein | - |
| BAY21_RS05265 (BAY21_05265) | - | 991064..992887 (+) | 1824 | WP_011227608.1 | acyltransferase family protein | - |
| BAY21_RS05270 (BAY21_05270) | ruvB | 992970..993971 (+) | 1002 | WP_002948618.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BAY21_RS05275 (BAY21_05275) | rpsJ | 994215..994523 (+) | 309 | WP_002952168.1 | 30S ribosomal protein S10 | - |
| BAY21_RS05280 (BAY21_05280) | rplC | 994640..995266 (+) | 627 | WP_002952166.1 | 50S ribosomal protein L3 | - |
| BAY21_RS05285 (BAY21_05285) | rplD | 995291..995914 (+) | 624 | WP_002885795.1 | 50S ribosomal protein L4 | - |
| BAY21_RS05290 (BAY21_05290) | - | 995914..996210 (+) | 297 | WP_002887066.1 | 50S ribosomal protein L23 | - |
| BAY21_RS05295 (BAY21_05295) | rplB | 996228..997061 (+) | 834 | WP_002952161.1 | 50S ribosomal protein L2 | - |
| BAY21_RS05300 (BAY21_05300) | rpsS | 997155..997433 (+) | 279 | WP_000533765.1 | 30S ribosomal protein S19 | - |
| BAY21_RS05305 (BAY21_05305) | rplV | 997449..997793 (+) | 345 | WP_002887063.1 | 50S ribosomal protein L22 | - |
| BAY21_RS05310 (BAY21_05310) | rpsC | 997806..998459 (+) | 654 | WP_002952158.1 | 30S ribosomal protein S3 | - |
| BAY21_RS05315 (BAY21_05315) | rplP | 998463..998876 (+) | 414 | WP_011226664.1 | 50S ribosomal protein L16 | - |
Sequence
Protein
Download Length: 333 a.a. Molecular weight: 37540.93 Da Isoelectric Point: 4.4605
>NTDB_id=160264 BAY21_RS05270 WP_002948618.1 992970..993971(+) (ruvB) [Streptococcus thermophilus strain CS8]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVID
DKIADQALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHMGYDYTRDN
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVID
DKIADQALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHMGYDYTRDN
Nucleotide
Download Length: 1002 bp
>NTDB_id=160264 BAY21_RS05270 WP_002948618.1 992970..993971(+) (ruvB) [Streptococcus thermophilus strain CS8]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAGGAGTATGTGGAGCGTACCCTTCGCCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAAATTTTTATAGAAGCAGCTAAACTCCGTGATGAGGCTCTAGACC
ATACCCTTTTGTTTGGCCCACCTGGTTTGGGTAAAACGACTATGGCATTTGTAATCGCCAATGAGATGGGAGTGAATTTG
AAGCAAACATCTGGGCCGGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGAGACATCTT
ATTTATTGATGAGATTCATCGTATGCCTATGGCAGTGGAAGAAGTTCTTTATAGCGCTATGGAAGATTACTACATCGATA
TCATGATTGGAGCAGGTGAAACAAGTCGTAGTGTTCATCTAGACCTGCCTCCCTTTACTTTGGTTGGTGCGACCACACGA
GCAGGTATGCTGTCAAATCCCTTGAGAGCTCGCTTTGGAATCAATGGTCATATGGAATATTATGAGTTACCTGATTTGAC
AGAGATTGTAGAACGTACTTCGGAAATCTTTGAAATGACAATAACACCAGAGGCTGCCTTGGAATTAGCACGGCGTAGTC
GTGGAACACCACGTATTGCTAACCGCCTGCTTAAGCGCGTGCGAGACTATGCTCAAATCATGGGTGATGGTGTCATTGAC
GATAAGATTGCAGATCAGGCATTGACTATGCTGGATGTAGATCATGAAGGGTTAGACTACGTTGACCAAAAAATCCTCCG
AACTATGATTGAGATGTATGGGGGAGGCCCAGTTGGCTTAGGTACTTTATCAGTTAATATTGCTGAAGAGCGAGAAACAG
TAGAAGATATGTATGAACCCTACCTAATCCAAAAAGGTTTCATTATGCGTACACGAACAGGACGTGTCGCAACTGCTAAA
GCCTATGAGCATATGGGATATGACTATACTCGAGATAATTAA
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAGGAGTATGTGGAGCGTACCCTTCGCCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAAATTTTTATAGAAGCAGCTAAACTCCGTGATGAGGCTCTAGACC
ATACCCTTTTGTTTGGCCCACCTGGTTTGGGTAAAACGACTATGGCATTTGTAATCGCCAATGAGATGGGAGTGAATTTG
AAGCAAACATCTGGGCCGGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGAGACATCTT
ATTTATTGATGAGATTCATCGTATGCCTATGGCAGTGGAAGAAGTTCTTTATAGCGCTATGGAAGATTACTACATCGATA
TCATGATTGGAGCAGGTGAAACAAGTCGTAGTGTTCATCTAGACCTGCCTCCCTTTACTTTGGTTGGTGCGACCACACGA
GCAGGTATGCTGTCAAATCCCTTGAGAGCTCGCTTTGGAATCAATGGTCATATGGAATATTATGAGTTACCTGATTTGAC
AGAGATTGTAGAACGTACTTCGGAAATCTTTGAAATGACAATAACACCAGAGGCTGCCTTGGAATTAGCACGGCGTAGTC
GTGGAACACCACGTATTGCTAACCGCCTGCTTAAGCGCGTGCGAGACTATGCTCAAATCATGGGTGATGGTGTCATTGAC
GATAAGATTGCAGATCAGGCATTGACTATGCTGGATGTAGATCATGAAGGGTTAGACTACGTTGACCAAAAAATCCTCCG
AACTATGATTGAGATGTATGGGGGAGGCCCAGTTGGCTTAGGTACTTTATCAGTTAATATTGCTGAAGAGCGAGAAACAG
TAGAAGATATGTATGAACCCTACCTAATCCAAAAAGGTTTCATTATGCGTACACGAACAGGACGTGTCGCAACTGCTAAA
GCCTATGAGCATATGGGATATGACTATACTCGAGATAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae TIGR4 |
88.182 |
99.099 |
0.874 |
| ruvB | Streptococcus pneumoniae R6 |
87.879 |
99.099 |
0.871 |
| ruvB | Streptococcus pneumoniae D39 |
87.879 |
99.099 |
0.871 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
58.359 |
98.799 |
0.577 |
| ruvB | Helicobacter pylori 26695 |
49.844 |
96.396 |
0.48 |
| ruvB | Synechocystis sp. PCC 6803 |
50.799 |
93.994 |
0.477 |