Detailed information NTG0160262

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BAY21_RS04900
• Genome accession: NZ_CP016439
• Coordinates: 922379..923479 (-)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain CS8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 917379..928479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAY21_RS04885 (BAY21_04885)	-	918230..919102 (-)	873	WP_011227628.1	YitT family protein	-
BAY21_RS04890 (BAY21_04890)	trpS	919530..920552 (+)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
BAY21_RS04895 (BAY21_04895)	guaB	920729..922210 (+)	1482	WP_011227627.1	IMP dehydrogenase	-
BAY21_RS04900 (BAY21_04900)	recF	922379..923479 (-)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
BAY21_RS04905 (BAY21_04905)	yaaA	923482..923859 (-)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
BAY21_RS04910 (BAY21_04910)	yfmF	923937..925187 (+)	1251	WP_011227626.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
BAY21_RS04915 (BAY21_04915)	yfmH	925189..926466 (+)	1278	WP_011227625.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
BAY21_RS04920 (BAY21_04920)	-	926525..927382 (+)	858	WP_011226703.1	helix-turn-helix domain-containing protein	-
BAY21_RS04925 (BAY21_04925)	pgsA	927395..927937 (+)	543	WP_011227624.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=160262 BAY21_RS04900 WP_002947786.1 922379..923479(-) (recF) [Streptococcus thermophilus strain CS8]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=160262 BAY21_RS04900 WP_002947786.1 922379..923479(-) (recF) [Streptococcus thermophilus strain CS8]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTCTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432