Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ASU36_RS13470 | Genome accession | NZ_CP013137 |
| Coordinates | 2654859..2655362 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain XQ | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2655988..2676193 | 2654859..2655362 | flank | 626 |
Gene organization within MGE regions
Location: 2654859..2676193
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASU36_RS13470 (ASU36_13470) | ssbA | 2654859..2655362 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ASU36_RS13475 (ASU36_13475) | rpsR | 2655414..2655656 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ASU36_RS13480 (ASU36_13480) | - | 2655988..2656614 (-) | 627 | WP_000281092.1 | hypothetical protein | - |
| ASU36_RS13485 (ASU36_13485) | - | 2656642..2657298 (-) | 657 | WP_225414827.1 | DUF3800 domain-containing protein | - |
| ASU36_RS13490 (ASU36_13490) | - | 2657301..2658515 (-) | 1215 | WP_000270126.1 | tyrosine-type recombinase/integrase | - |
| ASU36_RS13495 (ASU36_13495) | - | 2658814..2659548 (-) | 735 | WP_000142630.1 | helix-turn-helix domain-containing protein | - |
| ASU36_RS13500 (ASU36_13500) | - | 2659698..2659910 (+) | 213 | WP_001063624.1 | helix-turn-helix domain-containing protein | - |
| ASU36_RS13505 (ASU36_13505) | - | 2659911..2660183 (+) | 273 | WP_001138298.1 | helix-turn-helix domain-containing protein | - |
| ASU36_RS13510 (ASU36_13510) | - | 2660195..2660341 (+) | 147 | WP_000784887.1 | hypothetical protein | - |
| ASU36_RS13515 (ASU36_13515) | tscA | 2660334..2660543 (+) | 210 | WP_001058495.1 | type II toxin-antitoxin system antitoxin TscA | - |
| ASU36_RS13520 (ASU36_13520) | tscT | 2660546..2660872 (+) | 327 | WP_000383747.1 | type II toxin-antitoxin system toxin TscT | - |
| ASU36_RS13525 (ASU36_13525) | - | 2660937..2661806 (+) | 870 | WP_058008337.1 | primase alpha helix C-terminal domain-containing protein | - |
| ASU36_RS13530 (ASU36_13530) | - | 2661820..2663529 (+) | 1710 | WP_000447469.1 | DUF927 domain-containing protein | - |
| ASU36_RS13535 (ASU36_13535) | - | 2663839..2664219 (+) | 381 | WP_058008339.1 | hypothetical protein | - |
| ASU36_RS13540 (ASU36_13540) | - | 2664216..2664857 (+) | 642 | WP_001047698.1 | hypothetical protein | - |
| ASU36_RS13545 (ASU36_13545) | - | 2665307..2665648 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| ASU36_RS13550 (ASU36_13550) | - | 2665679..2666332 (+) | 654 | WP_000214172.1 | hypothetical protein | - |
| ASU36_RS13555 (ASU36_13555) | - | 2666385..2666912 (+) | 528 | WP_000771368.1 | spore coat protein | - |
| ASU36_RS13560 (ASU36_13560) | - | 2666915..2667256 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| ASU36_RS13565 (ASU36_13565) | - | 2667253..2667822 (+) | 570 | WP_058008341.1 | terminase small subunit | - |
| ASU36_RS13570 (ASU36_13570) | seb | 2668129..2668929 (+) | 801 | WP_000278086.1 | staphylococcal enterotoxin type B | - |
| ASU36_RS13575 (ASU36_13575) | - | 2669007..2669564 (-) | 558 | WP_001035615.1 | DUF4888 domain-containing protein | - |
| ASU36_RS13580 (ASU36_13580) | - | 2669938..2670090 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| ASU36_RS13585 (ASU36_13585) | - | 2670161..2670271 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| ASU36_RS13590 (ASU36_13590) | - | 2670273..2670458 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| ASU36_RS13595 (ASU36_13595) | - | 2671254..2672192 (-) | 939 | WP_072357673.1 | Abi family protein | - |
| ASU36_RS15270 | - | 2672243..2672902 (-) | 660 | Protein_2587 | tyrosine-type recombinase/integrase | - |
| ASU36_RS13605 (ASU36_13605) | selX | 2673143..2673754 (+) | 612 | WP_000475322.1 | staphylococcal enterotoxin-like toxin X | - |
| ASU36_RS13610 (ASU36_13610) | - | 2674123..2674491 (+) | 369 | WP_000849165.1 | YxeA family protein | - |
| ASU36_RS13615 (ASU36_13615) | - | 2674672..2675244 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ASU36_RS13620 (ASU36_13620) | - | 2675382..2675645 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| ASU36_RS13625 (ASU36_13625) | - | 2675939..2676193 (+) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=160256 ASU36_RS13470 WP_000934799.1 2654859..2655362(+) (ssbA) [Staphylococcus aureus strain XQ]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=160256 ASU36_RS13470 WP_000934799.1 2654859..2655362(+) (ssbA) [Staphylococcus aureus strain XQ]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |