NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	FORC40_RS08250	Genome accession	NZ_CP016398
Coordinates	1660111..1660797 (-)	Length	228 a.a.
NCBI ID	WP_000692886.1	Uniprot ID	-
Organism	Staphylococcus aureus strain FORC_040
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1655111..1665797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC40_RS08205 (FORC40_1489)	rpmA	1655755..1656039 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
FORC40_RS08210 (FORC40_1490)	-	1656051..1656371 (-)	321	WP_020978210.1	ribosomal-processing cysteine protease Prp	-
FORC40_RS08215 (FORC40_1491)	rplU	1656377..1656685 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
FORC40_RS08220 (FORC40_1492)	mreD	1657047..1657577 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
FORC40_RS08225 (FORC40_1493)	mreC	1657577..1658419 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
FORC40_RS08230	-	1658619..1658738 (-)	120	WP_000840602.1	hypothetical protein	-
FORC40_RS08235 (FORC40_1494)	-	1658812..1659285 (-)	474	WP_001236734.1	DUF4930 family protein	-
FORC40_RS08240	-	1659445..1659642 (+)	198	WP_000025835.1	hypothetical protein	-
FORC40_RS08245 (FORC40_1495)	-	1659759..1660043 (-)	285	WP_000171859.1	hypothetical protein	-
FORC40_RS08250 (FORC40_1496)	ysxA/radC	1660111..1660797 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
FORC40_RS08255 (FORC40_1497)	-	1660794..1661501 (-)	708	WP_001792860.1	prepilin peptidase	-
FORC40_RS08265 (FORC40_1498)	-	1661765..1663036 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
FORC40_RS08270 (FORC40_1499)	-	1663049..1665679 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.24 Da Isoelectric Point: 6.7572

                                >NTDB_id=160109 FORC40_RS08250 WP_000692886.1 1660111..1660797(-) (ysxA/radC) [Staphylococcus aureus strain FORC_040]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=160109 FORC40_RS08250 WP_000692886.1 1660111..1660797(-) (ysxA/radC) [Staphylococcus aureus strain FORC_040]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCAGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0160109