Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DW68_RS18420 Genome accession   NZ_CP013124
Coordinates   3944353..3945693 (+) Length   446 a.a.
NCBI ID   WP_017361288.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina S5.2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3939353..3950693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW68_RS18395 (DW68_018395) pgeF 3939503..3940234 (-) 732 WP_017361284.1 peptidoglycan editing factor PgeF -
  DW68_RS18400 (DW68_018400) rluD 3940231..3941205 (-) 975 WP_026041941.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DW68_RS18405 (DW68_018405) - 3941344..3942336 (+) 993 WP_017361286.1 outer membrane protein assembly factor BamD -
  DW68_RS26130 (DW68_018410) - 3942532..3942768 (+) 237 WP_013714194.1 PP0621 family protein -
  DW68_RS18415 (DW68_018415) pilS 3942758..3944350 (+) 1593 WP_017361287.1 PAS domain-containing sensor histidine kinase Regulator
  DW68_RS18420 (DW68_018420) pilR 3944353..3945693 (+) 1341 WP_017361288.1 sigma-54 dependent transcriptional regulator Regulator
  DW68_RS18425 (DW68_018425) thiO 3945710..3946810 (-) 1101 WP_036994836.1 glycine oxidase ThiO -
  DW68_RS26345 - 3946893..3946943 (+) 51 Protein_3647 hypothetical protein -
  DW68_RS18430 (DW68_018430) - 3947013..3947417 (+) 405 WP_169746326.1 GspH/FimT family protein -
  DW68_RS18435 (DW68_018435) - 3947528..3948043 (+) 516 WP_017361291.1 GspH/FimT family pseudopilin -
  DW68_RS18440 (DW68_018440) pilV 3948060..3948626 (+) 567 WP_017361292.1 type IV pilus modification protein PilV -
  DW68_RS25565 - 3948623..3949462 (+) 840 WP_080764245.1 PilW family protein -
  DW68_RS18450 (DW68_018450) - 3949474..3950007 (+) 534 WP_017361294.1 PilX N-terminal domain-containing pilus assembly protein -
  DW68_RS18455 (DW68_018455) - 3950019..3950342 (+) 324 WP_017361295.1 hypothetical protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49756.14 Da        Isoelectric Point: 5.6137

>NTDB_id=160090 DW68_RS18420 WP_017361288.1 3944353..3945693(+) (pilR) [Ectopseudomonas mendocina S5.2]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKSLRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRIEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIALLAEVM
LARLADGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPGDLRLADASGPGNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=160090 DW68_RS18420 WP_017361288.1 3944353..3945693(+) (pilR) [Ectopseudomonas mendocina S5.2]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGTTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCGCGCAACGTCAAAGAGGCGCGCGAGTGGCTGGCACGCGAACCCTTCGACCTGTGCTTAACCG
ATATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTTCCCGTGGCGATG
ATCACCGCTTACGGCAGCCTGGATACCGCGATCAACTCGCTCAAGGCCGGGGCCTTCGACTTTCTCACCAAACCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCGACCGCCCTGCGCATTCGCGCCCCCGAAGGTGAGGAAACACCAGTCGATAGCC
GCCTGCTCGGCGACTCGCCACCGATGAAGTCGCTGCGTAAGCAGATCCTGAAGCTCTCGCGCAGTCAGGCACCGGTCTAC
ATCAGCGGCGAATCGGGCAGTGGCAAGGAGCTGGTTGCCCGCCTGATCCATGAGCAGGGCCCACGCATCGAACAACCGTT
CGTGCCGGTCAACTGCGGCGCGATACCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGTCACAAGAAGGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCAGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGATCTGCCA
CTGCCAATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAGGCCGTGCGCGCCGTCGGTGGCCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTTGCCGCCGAAGTCGCCGCGGGCCGCTTCCGTCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCACCACTGCGTGAACGTCGCGAGGACATCGCCCTGCTGGCTGAGGTGATG
CTTGCGCGCCTGGCCGATGGTACTGGTCTGGCCGCCGCCAAACTGCACCCCGACGCGCTGGAAAAGCTGAAGAATTACCG
TTTCCCGGGCAACGTGCGCGAGCTAGAGAACATGCTCGAACGCGCCTACACCCTCTGCGAAGACGATCAGATAACACCTG
GCGACCTACGCCTGGCCGACGCCAGCGGCCCTGGCAACGAAGGCGGCGAAGCTAGCCTAGCGCAGATCGACAACCTTGAG
GACTACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCCCTGGAAGAAACACGCTGGAATCGCACGGCCGCGGCCCA
GCGCCTGGGCCTGACCTTCCGTTCGATGCGCTACCGCCTGAAGAAGCTGGGCATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.686

100

0.897
  pilR Acinetobacter baumannii strain A118

49.565

100

0.511
  luxO Vibrio cholerae strain A1552

38.117

100

0.381

Multiple sequence alignment