Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UZ73_RS11350 Genome accession   NZ_CP013119
Coordinates   2506090..2506605 (+) Length   171 a.a.
NCBI ID   WP_035269622.1    Uniprot ID   A0AAE9H8A3
Organism   Alcaligenes faecalis strain ZD02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2501090..2511605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UZ73_RS11340 (UZ73_11340) uvrA 2501543..2504506 (-) 2964 WP_045929376.1 excinuclease ABC subunit UvrA -
  UZ73_RS11345 (UZ73_11345) - 2504618..2505829 (+) 1212 WP_022983677.1 MFS transporter -
  UZ73_RS11350 (UZ73_11350) ssb 2506090..2506605 (+) 516 WP_035269622.1 single-stranded DNA-binding protein Machinery gene
  UZ73_RS11355 (UZ73_11355) - 2506792..2509263 (-) 2472 WP_081045457.1 TonB-dependent siderophore receptor -
  UZ73_RS11360 (UZ73_11360) - 2509343..2510284 (-) 942 WP_045929770.1 FecR domain-containing protein -
  UZ73_RS11365 (UZ73_11365) - 2510305..2510805 (-) 501 WP_045929377.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18816.84 Da        Isoelectric Point: 5.3412

>NTDB_id=160038 UZ73_RS11350 WP_035269622.1 2506090..2506605(+) (ssb) [Alcaligenes faecalis strain ZD02]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMSD
NLADMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=160038 UZ73_RS11350 WP_035269622.1 2506090..2506605(+) (ssb) [Alcaligenes faecalis strain ZD02]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAGCGCCGTGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATCGCGGGTGAGTACCTGCGCAAAGGCCGCCCTGTCTACGTAGAAGGT
CGCCTGCGCACCCGTAAATGGACAGGCCAGGACGGTCAGGAGCGTTTCACGACTGAGATCATCGCCGAGCAAATGCAGAT
GCTGGGTGGCCGTGACGGTGGTGATATGGGCGGCGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGCACCAG
CTCCACAACGTGCTCAGCGCCCAGCGCCTCAGCAACAGCAGCAACAACAGGCCCCACGTAATAACGCTCCTATGTCGGAC
AATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.323

100

0.567
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.544
  ssb Neisseria meningitidis MC58

48.066

100

0.509
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.509

Multiple sequence alignment