Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   APZ00_RS19150 Genome accession   NZ_CP013068
Coordinates   4204918..4205463 (-) Length   181 a.a.
NCBI ID   WP_058899875.1    Uniprot ID   A0A0U3PXB8
Organism   Pannonibacter phragmitetus strain 31801     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4199918..4210463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ00_RS19135 (APZ00_19135) - 4201480..4201686 (+) 207 WP_055455395.1 hypothetical protein -
  APZ00_RS19140 (APZ00_19140) - 4201694..4202398 (+) 705 WP_058899873.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  APZ00_RS19145 (APZ00_19145) - 4202542..4204560 (-) 2019 WP_058899874.1 L,D-transpeptidase family protein -
  APZ00_RS19150 (APZ00_19150) ssb 4204918..4205463 (-) 546 WP_058899875.1 single-stranded DNA-binding protein Machinery gene
  APZ00_RS19155 (APZ00_19155) uvrA 4206288..4209197 (+) 2910 WP_099052161.1 excinuclease ABC subunit UvrA -
  APZ00_RS26035 - 4209892..4210041 (+) 150 WP_019966089.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18514.17 Da        Isoelectric Point: 5.3123

>NTDB_id=159556 APZ00_RS19150 WP_058899875.1 4204918..4205463(-) (ssb) [Pannonibacter phragmitetus strain 31801]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSETWRDRGSGERRERTEWHRVVIFNEGLCKIAEQYLRKGAKVYI
EGQLQTRKWQDQSGQERFSTEVVLQGFNSALTMLDGRGEGGGGGGGGGGALPDYGSGGGYEGGSSGGGGYGGGSSGGSGY
GGGSGGAGGGYGGGMDDEIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=159556 APZ00_RS19150 WP_058899875.1 4204918..4205463(-) (ssb) [Pannonibacter phragmitetus strain 31801]
ATGGCGGGTAGCGTGAACAAGGTCATTCTGGTTGGCAATCTGGGGGCGGATCCCGAGATCCGCCGCACGCAGGATGGCCG
TCCCATCGCCAATTTGCGCATTGCCACGTCCGAGACGTGGCGGGACCGCGGGTCGGGGGAGCGGCGCGAGCGCACCGAAT
GGCACCGGGTGGTGATCTTCAATGAAGGCCTTTGCAAGATTGCCGAGCAGTACCTGCGCAAGGGCGCGAAGGTTTACATC
GAGGGCCAGTTGCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTTCTCCACCGAAGTGGTGCTGCAGGGCTT
CAACTCGGCACTGACCATGCTGGACGGGCGCGGTGAAGGCGGCGGCGGCGGCGGCGGCGGTGGTGGCGCACTGCCGGATT
ACGGCTCAGGCGGCGGCTATGAAGGCGGCTCCAGCGGTGGCGGCGGCTATGGCGGTGGTTCGAGCGGCGGCAGCGGTTAC
GGTGGCGGCTCCGGTGGTGCAGGCGGCGGCTATGGCGGCGGCATGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3PXB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.027

100

0.481
  ssb Glaesserella parasuis strain SC1401

45.989

100

0.475
  ssb Neisseria gonorrhoeae MS11

36.757

100

0.376
  ssb Neisseria meningitidis MC58

36.757

100

0.376

Multiple sequence alignment