Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AOT82_RS10445 Genome accession   NZ_CP012969
Coordinates   2440529..2441584 (+) Length   351 a.a.
NCBI ID   WP_071002928.1    Uniprot ID   A0A1D9D183
Organism   Psychrobacter sp. AntiMn-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2435529..2446584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT82_RS10435 (AOT82_2188) - 2437064..2437588 (+) 525 WP_071002926.1 DUF6586 family protein -
  AOT82_RS10440 (AOT82_2189) - 2437691..2440336 (-) 2646 WP_071002927.1 PBP1A family penicillin-binding protein -
  AOT82_RS10445 (AOT82_2190) comM 2440529..2441584 (+) 1056 WP_071002928.1 type IV pilus assembly protein PilM Machinery gene
  AOT82_RS10450 (AOT82_2191) - 2441584..2442234 (+) 651 WP_071002929.1 PilN domain-containing protein -
  AOT82_RS10455 (AOT82_2192) pilO 2442231..2442965 (+) 735 WP_071002930.1 type 4a pilus biogenesis protein PilO -
  AOT82_RS10460 (AOT82_2193) - 2442965..2443498 (+) 534 WP_058025948.1 pilus assembly protein PilP -
  AOT82_RS10465 (AOT82_2195) pilQ 2443526..2445895 (+) 2370 WP_071002931.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38274.60 Da        Isoelectric Point: 4.3824

>NTDB_id=158670 AOT82_RS10445 WP_071002928.1 2440529..2441584(+) (comM) [Psychrobacter sp. AntiMn-1]
MRLFTSKSRHLIGVDICATSVKIVDIQRQQGMFHLKSYGIERLPEGVVVDKLLVDTEAVGNIIASLARRCQVAGSNAATA
VSGSAVITKIIDMDMMLSDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLVSEDMVQVLLAASRSENVDQRVDALAFG
GMQTKVMDIESHAIERAFGLMADNLPNMPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGVQLTEAIQNRYGLSAEEA
TLSKRERTLPDDYYPEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQKLGVSVSVANPFTN
MTIAPNIDNEQLTIDAPGLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=158670 AOT82_RS10445 WP_071002928.1 2440529..2441584(+) (comM) [Psychrobacter sp. AntiMn-1]
GTGAGGCTATTTACTTCAAAAAGTCGACATTTGATTGGTGTGGATATTTGTGCCACTTCAGTAAAAATAGTGGACATACA
GCGTCAACAAGGCATGTTCCACCTAAAATCTTACGGTATTGAGAGACTACCAGAAGGTGTAGTCGTCGACAAACTCCTAG
TTGATACAGAGGCGGTTGGCAACATTATAGCGAGTCTAGCAAGACGTTGCCAAGTTGCGGGCAGTAATGCTGCAACCGCC
GTATCAGGATCTGCCGTCATCACCAAAATTATTGATATGGATATGATGCTAAGCGATGTTGAGCGTGAAGCACAAATACG
TTTGGATGCTGATCAATATGTGCCTTATCCATTAGAAGATGTCAATTTAGATTTTGAGGTGCTAGGTCCATCTTTAGTGA
GTGAGGATATGGTACAAGTACTGCTTGCGGCCTCTCGCTCAGAAAACGTTGATCAGCGTGTTGATGCGTTGGCCTTTGGT
GGTATGCAAACCAAGGTTATGGATATCGAGTCACATGCAATAGAGCGCGCTTTTGGACTGATGGCAGACAATCTGCCAAA
TATGCCAGAACTGGTCGCTTTGGTTGATATCGGCCATAATCAAACCACTTTATATATCGCAAAGAATGGTGAGTTTATTT
ATAGTCGCGAGCAATTGTTTGGCGGTGTTCAGTTAACAGAAGCGATTCAAAACCGGTATGGGTTGTCAGCTGAAGAGGCA
ACGCTGAGCAAACGTGAGCGCACATTGCCTGATGACTACTATCCTGAAGTTTTGACCCCTTTTATAGAAAATACCATTCA
GCAAATCACTCGTTCCTTACAATTTTACTTCTCCTCAAGTCAGTATAGTAGTATTGACCACGTGGTACTTGCGGGTGGTA
GTAGCTCCATTGCAGGTCTTGCTGGGATGGCACAACAAAAACTCGGTGTAAGCGTTAGTGTTGCCAATCCGTTTACCAAT
ATGACCATTGCGCCTAATATCGATAATGAGCAATTGACCATTGACGCGCCAGGATTAATGGCTGCATGCGGTCTTGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9D183

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.142

100

0.501
  pilM Acinetobacter baumannii D1279779

49.573

100

0.496
  comM Acinetobacter baylyi ADP1

48.023

100

0.484
  pilM Legionella pneumophila strain ERS1305867

40.793

100

0.41

Multiple sequence alignment