Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOT82_RS05835 Genome accession   NZ_CP012969
Coordinates   1388177..1388791 (-) Length   204 a.a.
NCBI ID   WP_071002203.1    Uniprot ID   -
Organism   Psychrobacter sp. AntiMn-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1383177..1393791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT82_RS05810 (AOT82_1235) gspN 1383739..1384575 (-) 837 WP_083328865.1 type II secretion system protein N -
  AOT82_RS05815 (AOT82_1236) - 1384818..1385141 (-) 324 WP_071002199.1 H-NS histone family protein -
  AOT82_RS05820 (AOT82_1237) - 1385596..1386033 (-) 438 WP_071002200.1 BLUF domain-containing protein -
  AOT82_RS05825 (AOT82_1238) - 1386091..1386609 (-) 519 WP_071002201.1 BLUF domain-containing protein -
  AOT82_RS05830 (AOT82_1239) - 1386685..1387359 (-) 675 WP_071002202.1 hypothetical protein -
  AOT82_RS05835 (AOT82_1241) ssb 1388177..1388791 (-) 615 WP_071002203.1 single-stranded DNA-binding protein Machinery gene
  AOT82_RS05840 (AOT82_1242) - 1388878..1390242 (-) 1365 WP_071002204.1 MFS transporter -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22179.87 Da        Isoelectric Point: 5.9191

>NTDB_id=158658 AOT82_RS05835 WP_071002203.1 1388177..1388791(-) (ssb) [Psychrobacter sp. AntiMn-1]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDQNGQDRYITEIRAEQMQMLDGMSGGQSDNGGFSNNQGGQNSNSYGNQGGQSNQNNFGQQAGGQPAQRGGYN
NQPSGGQNSFNNQNAPAPQNQFNQPAQSKPTAMSDGPVDDDIPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=158658 AOT82_RS05835 WP_071002203.1 1388177..1388791(-) (ssb) [Psychrobacter sp. AntiMn-1]
ATGCGCGGAGTTAATAAAGTTATCATCATCGGTAACCTTGGAGCAGATCCTGAGGCACGCCAGTTCAATAATGGCGGTAG
CGTGACTAATATCTCGGTTGCGACATCTGAGCAGTGGACGGATAAACAAAGCGGTGAAAAAAGAGAAGCGACAGAGTGGC
ATCGTATCTCACTGTTTAATCGTTTGGGTGAAATCGCTGCACAGTATCTGCGTAAAGGCAGCAAGGTCTATATTGAAGGT
AGCTTGCGTACGCGTAAGTACCAAGACCAGAACGGTCAAGATCGTTATATTACGGAGATTCGAGCTGAGCAAATGCAGAT
GCTTGATGGTATGAGTGGTGGCCAAAGCGATAATGGAGGCTTTAGTAACAATCAAGGTGGCCAGAACTCAAACAGTTACG
GCAACCAAGGCGGTCAAAGCAACCAAAATAATTTCGGTCAGCAAGCAGGTGGCCAGCCAGCACAGCGAGGCGGCTACAAT
AACCAACCGAGTGGCGGTCAGAACAGCTTTAATAACCAAAATGCACCTGCGCCGCAAAATCAGTTTAATCAACCCGCGCA
ATCTAAGCCTACGGCAATGTCAGATGGCCCTGTAGACGATGATATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.208

100

0.52
  ssb Vibrio cholerae strain A1552

45.588

100

0.456
  ssb Neisseria meningitidis MC58

40.394

99.51

0.402
  ssb Neisseria gonorrhoeae MS11

40.394

99.51

0.402

Multiple sequence alignment