Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACT74_RS08530 Genome accession   NZ_CP012958
Coordinates   1776341..1776820 (+) Length   159 a.a.
NCBI ID   WP_014167545.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain VT1169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1771341..1781820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT74_RS08510 (ACT74_08505) - 1771606..1772016 (+) 411 WP_005589530.1 MerR family transcriptional regulator -
  ACT74_RS08515 (ACT74_08510) - 1772093..1772899 (-) 807 WP_162199730.1 IS3 family transposase -
  ACT74_RS08520 (ACT74_08520) - 1772896..1773268 (-) 373 Protein_1679 transposase -
  ACT74_RS08525 (ACT74_08525) uvrA 1773340..1776171 (-) 2832 WP_005543937.1 excinuclease ABC subunit UvrA -
  ACT74_RS08530 (ACT74_08530) ssb 1776341..1776820 (+) 480 WP_014167545.1 single-stranded DNA-binding protein Machinery gene
  ACT74_RS08535 (ACT74_08535) - 1776969..1778243 (+) 1275 WP_061869969.1 site-specific integrase -
  ACT74_RS08540 (ACT74_08540) - 1778233..1779753 (+) 1521 WP_196755596.1 site-specific integrase -
  ACT74_RS08545 (ACT74_08545) - 1779756..1781795 (+) 2040 WP_061869970.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17817.63 Da        Isoelectric Point: 5.9482

>NTDB_id=158586 ACT74_RS08530 WP_014167545.1 1776341..1776820(+) (ssb) [Aggregatibacter actinomycetemcomitans strain VT1169]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRAARQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=158586 ACT74_RS08530 WP_014167545.1 1776341..1776820(+) (ssb) [Aggregatibacter actinomycetemcomitans strain VT1169]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGCTCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70

100

0.792
  ssb Vibrio cholerae strain A1552

57.471

100

0.629
  ssb Neisseria meningitidis MC58

47.159

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.522

Multiple sequence alignment