Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   ASO12_RS02430 Genome accession   NZ_CP016015
Coordinates   451356..451967 (+) Length   203 a.a.
NCBI ID   WP_047921729.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 32867     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446356..456967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASO12_RS02405 (ASO12_02405) - 446673..447254 (-) 582 WP_047918049.1 superoxide dismutase -
  ASO12_RS02410 (ASO12_02410) dnaB 447417..448823 (+) 1407 WP_003690896.1 replicative DNA helicase -
  ASO12_RS02415 (ASO12_02415) pilH 449131..449796 (+) 666 WP_047918678.1 GspH/FimT family pseudopilin Machinery gene
  ASO12_RS02420 (ASO12_02420) pilV 449828..450436 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Regulator
  ASO12_RS02425 (ASO12_02425) pilJ 450433..451377 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  ASO12_RS02430 (ASO12_02430) pilK 451356..451967 (+) 612 WP_047921729.1 pilus assembly PilX family protein Machinery gene
  ASO12_RS02435 (ASO12_02435) pilL 451969..452442 (+) 474 WP_180364901.1 PilX family type IV pilin Machinery gene
  ASO12_RS02440 (ASO12_02440) - 452512..452820 (-) 309 WP_010951048.1 AzlD family protein -
  ASO12_RS13850 - 452817..453524 (-) 708 Protein_456 AzlC family ABC transporter permease -
  ASO12_RS02450 (ASO12_02450) dut 453690..454142 (+) 453 WP_047918679.1 dUTP diphosphatase -
  ASO12_RS02455 (ASO12_02455) dapC 454218..455405 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -
  ASO12_RS02460 (ASO12_02460) yaaA 455716..456495 (+) 780 WP_047918681.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22182.00 Da        Isoelectric Point: 5.3780

>NTDB_id=158570 ASO12_RS02430 WP_047921729.1 451356..451967(+) (pilK) [Neisseria gonorrhoeae strain 32867]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPVKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=158570 ASO12_RS02430 WP_047921729.1 451356..451967(+) (pilK) [Neisseria gonorrhoeae strain 32867]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGTAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

99.507

100

0.995

Multiple sequence alignment