Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI16_RS07245 Genome accession   NZ_CP012957
Coordinates   1388542..1388859 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain CJ001CC354     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383542..1393859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI16_RS07225 (AEI16_07195) ctsE 1384411..1385970 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  AEI16_RS07230 (AEI16_07200) ctsX 1385960..1386547 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  AEI16_RS07235 (AEI16_07205) ctsP 1386551..1387159 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI16_RS07240 (AEI16_07210) ctsD 1387152..1388570 (-) 1419 WP_052783256.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI16_RS07245 (AEI16_07215) ctsR 1388542..1388859 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  AEI16_RS07250 (AEI16_07220) nifJ 1388883..1392443 (-) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI16_RS07255 (AEI16_07225) - 1392536..1393177 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=158569 AEI16_RS07245 WP_002851255.1 1388542..1388859(-) (ctsR) [Campylobacter jejuni strain CJ001CC354]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=158569 AEI16_RS07245 WP_002851255.1 1388542..1388859(-) (ctsR) [Campylobacter jejuni strain CJ001CC354]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment