Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ASO12_RS02415 Genome accession   NZ_CP016015
Coordinates   449131..449796 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 32867     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444131..454796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASO12_RS02390 (ASO12_02390) cysT 444252..445088 (-) 837 WP_003687907.1 sulfate ABC transporter permease subunit CysT -
  ASO12_RS02395 (ASO12_02395) - 445269..445601 (+) 333 WP_003687908.1 hypothetical protein -
  ASO12_RS02400 (ASO12_02400) - 445932..446441 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ASO12_RS02405 (ASO12_02405) - 446673..447254 (-) 582 WP_047918049.1 superoxide dismutase -
  ASO12_RS02410 (ASO12_02410) dnaB 447417..448823 (+) 1407 WP_003690896.1 replicative DNA helicase -
  ASO12_RS02415 (ASO12_02415) pilH 449131..449796 (+) 666 WP_047918678.1 GspH/FimT family pseudopilin Machinery gene
  ASO12_RS02420 (ASO12_02420) pilV 449828..450436 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Regulator
  ASO12_RS02425 (ASO12_02425) pilJ 450433..451377 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  ASO12_RS02430 (ASO12_02430) pilK 451356..451967 (+) 612 WP_047921729.1 pilus assembly PilX family protein Machinery gene
  ASO12_RS02435 (ASO12_02435) pilL 451969..452442 (+) 474 WP_180364901.1 PilX family type IV pilin Machinery gene
  ASO12_RS02440 (ASO12_02440) - 452512..452820 (-) 309 WP_010951048.1 AzlD family protein -
  ASO12_RS13850 - 452817..453524 (-) 708 Protein_456 AzlC family ABC transporter permease -
  ASO12_RS02450 (ASO12_02450) dut 453690..454142 (+) 453 WP_047918679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=158567 ASO12_RS02415 WP_047918678.1 449131..449796(+) (pilH) [Neisseria gonorrhoeae strain 32867]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=158567 ASO12_RS02415 WP_047918678.1 449131..449796(+) (pilH) [Neisseria gonorrhoeae strain 32867]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869

Multiple sequence alignment