Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   AEI16_RS07240 Genome accession   NZ_CP012957
Coordinates   1387152..1388570 (-) Length   472 a.a.
NCBI ID   WP_052783256.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ001CC354     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382152..1393570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI16_RS07215 (AEI16_07185) - 1382476..1383240 (+) 765 WP_002855821.1 TSUP family transporter -
  AEI16_RS07220 (AEI16_07190) ctsF 1383233..1384414 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  AEI16_RS07225 (AEI16_07195) ctsE 1384411..1385970 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  AEI16_RS07230 (AEI16_07200) ctsX 1385960..1386547 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  AEI16_RS07235 (AEI16_07205) ctsP 1386551..1387159 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI16_RS07240 (AEI16_07210) ctsD 1387152..1388570 (-) 1419 WP_052783256.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI16_RS07245 (AEI16_07215) ctsR 1388542..1388859 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  AEI16_RS07250 (AEI16_07220) nifJ 1388883..1392443 (-) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI16_RS07255 (AEI16_07225) - 1392536..1393177 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53320.97 Da        Isoelectric Point: 6.6184

>NTDB_id=158568 AEI16_RS07240 WP_052783256.1 1387152..1388570(-) (ctsD) [Campylobacter jejuni strain CJ001CC354]
MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEI
FNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQN
FNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=158568 AEI16_RS07240 WP_052783256.1 1387152..1388570(-) (ctsD) [Campylobacter jejuni strain CJ001CC354]
ATGATAAGATTAATATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTT
TGATATCAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTG
TTAAAGATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATT
TTTAATTTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAA
GATTTTTAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGC
AAAGTGAATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAAT
ATAGAAAAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGC
AGGTCTTATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTA
AAAAACAAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAAT
TTTAATATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAA
TTTGGGTTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTA
ATCCAAAGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATAT
CTTGCCTGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATA
ATAAACGACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAAT
AATCAAACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAAT
TCCAATCCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTA
TAGTAGATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.576

100

0.996

Multiple sequence alignment