Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   AEI16_RS07220 Genome accession   NZ_CP012957
Coordinates   1383233..1384414 (-) Length   393 a.a.
NCBI ID   WP_002867247.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ001CC354     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1378233..1389414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI16_RS07190 (AEI16_07160) - 1378777..1379118 (+) 342 WP_070301918.1 hypothetical protein -
  AEI16_RS07195 (AEI16_07165) flgM 1379181..1379378 (+) 198 WP_002867249.1 flagellar biosynthesis anti-sigma factor FlgM -
  AEI16_RS07200 (AEI16_07170) - 1379421..1379855 (+) 435 WP_002779263.1 flagellar protein FlgN -
  AEI16_RS07205 (AEI16_07175) flgK 1379865..1381691 (+) 1827 WP_070301916.1 flagellar hook-associated protein FlgK -
  AEI16_RS07210 (AEI16_07180) - 1381708..1382472 (+) 765 WP_002851318.1 TIGR02757 family protein -
  AEI16_RS07215 (AEI16_07185) - 1382476..1383240 (+) 765 WP_002855821.1 TSUP family transporter -
  AEI16_RS07220 (AEI16_07190) ctsF 1383233..1384414 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  AEI16_RS07225 (AEI16_07195) ctsE 1384411..1385970 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  AEI16_RS07230 (AEI16_07200) ctsX 1385960..1386547 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  AEI16_RS07235 (AEI16_07205) ctsP 1386551..1387159 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI16_RS07240 (AEI16_07210) ctsD 1387152..1388570 (-) 1419 WP_052783256.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI16_RS07245 (AEI16_07215) ctsR 1388542..1388859 (-) 318 WP_002851255.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45750.33 Da        Isoelectric Point: 9.0938

>NTDB_id=158564 AEI16_RS07220 WP_002867247.1 1383233..1384414(-) (ctsF) [Campylobacter jejuni strain CJ001CC354]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=158564 AEI16_RS07220 WP_002867247.1 1383233..1384414(-) (ctsF) [Campylobacter jejuni strain CJ001CC354]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment