Detailed information NTG0158473

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC23_RS03230
• Genome accession: NZ_CP012950
• Coordinates: 653042..653911 (-)
• Length: 289 a.a.
• NCBI ID: WP_025523093.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_023 isolate 378
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 648042..658911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC23_RS03195 (FORC23_0537)	rpsP	649082..649330 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
FORC23_RS03200 (FORC23_0538)	rimM	649359..649907 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
FORC23_RS03205 (FORC23_0539)	trmD	649935..650678 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC23_RS03210 (FORC23_0540)	rplS	650720..651073 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
FORC23_RS03215 (FORC23_0541)	yacG	651396..651590 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FORC23_RS03220 (FORC23_0542)	zapD	651659..652399 (-)	741	WP_015297254.1	cell division protein ZapD	-
FORC23_RS03225 (FORC23_0543)	coaE	652427..653041 (-)	615	WP_025523092.1	dephospho-CoA kinase	-
FORC23_RS03230 (FORC23_0544)	pilD	653042..653911 (-)	870	WP_025523093.1	prepilin peptidase	Machinery gene
FORC23_RS03235 (FORC23_0545)	pilC	653976..655199 (-)	1224	WP_025523095.1	type II secretion system F family protein	Machinery gene
FORC23_RS03240 (FORC23_0546)	pilB	655224..656909 (-)	1686	WP_070225511.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC23_RS03245 (FORC23_0547)	pilA	656913..657362 (-)	450	WP_024699421.1	pilin	Machinery gene
FORC23_RS03250 (FORC23_0548)	nadC	657626..658513 (-)	888	WP_025523098.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32399.52 Da
• Isoelectric Point: 7.1971

>NTDB_id=158473 FORC23_RS03230 WP_025523093.1 653042..653911(-) (pilD) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIVGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=158473 FORC23_RS03230 WP_025523093.1 653042..653911(-) (pilD) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGT
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446