Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | FORC23_RS02180 | Genome accession | NZ_CP012950 |
| Coordinates | 454412..455056 (-) | Length | 214 a.a. |
| NCBI ID | WP_005480993.1 | Uniprot ID | Q87LA2 |
| Organism | Vibrio parahaemolyticus strain FORC_023 isolate 378 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 449412..460056
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC23_RS02170 (FORC23_0366) | uvrA | 450322..453144 (-) | 2823 | WP_005490537.1 | excinuclease ABC subunit UvrA | - |
| FORC23_RS02175 (FORC23_0367) | galU | 453282..454154 (-) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| FORC23_RS02180 (FORC23_0368) | qstR | 454412..455056 (-) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| FORC23_RS02185 (FORC23_0369) | ssb | 455335..455865 (+) | 531 | WP_005466625.1 | single-stranded DNA-binding protein | Machinery gene |
| FORC23_RS02190 (FORC23_0370) | csrD | 456106..458115 (+) | 2010 | WP_070225490.1 | RNase E specificity factor CsrD | - |
| FORC23_RS02195 (FORC23_0371) | - | 458127..459572 (+) | 1446 | WP_031415069.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 214 a.a. Molecular weight: 24386.20 Da Isoelectric Point: 8.7760
>NTDB_id=158464 FORC23_RS02180 WP_005480993.1 454412..455056(-) (qstR) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS
Nucleotide
Download Length: 645 bp
>NTDB_id=158464 FORC23_RS02180 WP_005480993.1 454412..455056(-) (qstR) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAGTCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAGTCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| qstR | Vibrio campbellii strain DS40M4 |
89.252 |
100 |
0.893 |
| qstR | Vibrio cholerae strain A1552 |
52.093 |
100 |
0.523 |