Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   APS40_RS20605 Genome accession   NZ_CP012945
Coordinates   4306673..4307173 (+) Length   166 a.a.
NCBI ID   WP_055048829.1    Uniprot ID   -
Organism   Devosia sp. A16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4301673..4312173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APS40_RS20595 - 4302502..4303122 (-) 621 WP_055048827.1 RNA ligase family protein -
  APS40_RS20600 uvrA 4303375..4306263 (-) 2889 WP_055048828.1 excinuclease ABC subunit UvrA -
  APS40_RS20605 ssb 4306673..4307173 (+) 501 WP_055048829.1 single-stranded DNA-binding protein Machinery gene
  APS40_RS20610 - 4307371..4308120 (-) 750 WP_055048830.1 helix-turn-helix transcriptional regulator -
  APS40_RS20615 - 4308148..4308507 (-) 360 WP_156343021.1 hypothetical protein -
  APS40_RS20620 - 4308626..4309171 (+) 546 WP_055048832.1 hypothetical protein -
  APS40_RS20625 - 4309197..4311092 (-) 1896 WP_055048833.1 diguanylate cyclase -
  APS40_RS20630 - 4311253..4311786 (-) 534 WP_055048834.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17980.82 Da        Isoelectric Point: 5.9618

>NTDB_id=158411 APS40_RS20605 WP_055048829.1 4306673..4307173(+) (ssb) [Devosia sp. A16]
MAGSVNKVILVGNLGNDPEVRNLPSGGKVVNLSVATSDQWRDKNTGERKERTEWHRVVIFSEGLVRVAEQYLRKGSKVYI
EGSLQTRKWQDQSGQDKYSTEVVLQGFNSTLTMLDGRGDGEGASGGGGFSSPRESSGFGGPPARQERRPSSAPAFESGSM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=158411 APS40_RS20605 WP_055048829.1 4306673..4307173(+) (ssb) [Devosia sp. A16]
ATGGCTGGCAGCGTGAACAAGGTCATCCTGGTAGGCAATCTCGGCAATGACCCCGAGGTGCGGAACCTGCCGTCAGGCGG
CAAGGTGGTGAACCTCAGCGTCGCGACCTCCGACCAGTGGCGCGACAAGAACACCGGCGAGCGCAAGGAGCGTACCGAGT
GGCACCGCGTGGTGATCTTCTCGGAAGGGCTGGTGCGCGTTGCCGAGCAGTACCTGCGCAAGGGCTCAAAGGTTTACATC
GAAGGCTCGCTGCAGACCCGCAAGTGGCAGGATCAGTCCGGCCAGGACAAATACTCGACCGAGGTCGTGCTGCAGGGCTT
CAACTCGACGCTGACCATGCTCGATGGACGCGGCGATGGCGAAGGCGCTTCGGGTGGCGGTGGCTTCTCGAGCCCGCGGG
AATCGAGCGGCTTCGGCGGCCCGCCGGCCCGCCAGGAGCGGCGCCCGAGCTCGGCTCCGGCGTTCGAGTCGGGCTCGATG
GATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.069

100

0.584
  ssb Glaesserella parasuis strain SC1401

50

100

0.56
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.44
  ssb Neisseria meningitidis MC58

40.11

100

0.44

Multiple sequence alignment