Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   APQ97_RS10410 Genome accession   NZ_CP012911
Coordinates   2081207..2082079 (-) Length   290 a.a.
NCBI ID   WP_053866392.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2076207..2087079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS10370 (APQ97_10365) - 2076336..2076887 (-) 552 WP_014636756.1 folate family ECF transporter S component -
  APQ97_RS10375 (APQ97_10370) - 2077202..2078389 (-) 1188 WP_002936543.1 acetate kinase -
  APQ97_RS10380 (APQ97_10375) comYH 2078439..2079392 (-) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  APQ97_RS10385 (APQ97_10380) comGG 2079449..2079859 (-) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  APQ97_RS10390 (APQ97_10385) comGF/cglF 2079837..2080271 (-) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  APQ97_RS10395 (APQ97_10390) comYE 2080258..2080551 (-) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  APQ97_RS10400 (APQ97_10395) comGD 2080635..2080943 (-) 309 WP_002936549.1 competence type IV pilus minor pilin ComGD -
  APQ97_RS10405 (APQ97_10400) comYC 2080924..2081205 (-) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  APQ97_RS10410 (APQ97_10405) comYB 2081207..2082079 (-) 873 WP_053866392.1 type II secretion system F family protein Machinery gene
  APQ97_RS10415 (APQ97_10410) comYA 2081991..2082941 (-) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  APQ97_RS10420 (APQ97_10415) - 2083027..2083977 (+) 951 WP_002936565.1 S66 peptidase family protein -
  APQ97_RS10425 (APQ97_10420) - 2084012..2084377 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32726.02 Da        Isoelectric Point: 9.8896

>NTDB_id=158235 APQ97_RS10410 WP_053866392.1 2081207..2082079(-) (comYB) [Streptococcus suis strain NSUI060]
MRKLIAFLQQDISVLGRQKQKKLPLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADLYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLFLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLCGLSLVAVLAGMVWFRKTNKIKAFSRLAALPFFGKLIQIYLTAYYAREWGSLIVEYGQVKSKLGGELT
VYAAECWEDFFSRVNRAMQLIQPLVFLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=158235 APQ97_RS10410 WP_053866392.1 2081207..2082079(-) (comYB) [Streptococcus suis strain NSUI060]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTAGGCAGGCAGAAACAGAAAAAATTGCCCTTGGTTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCTCTATACCCAGGTCTTGTCAGACGGGTTGCTGGCAGGCAAACCCTTTTCGAGTTTACTG
GCAGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATCTTAC
TGGGTTTTCTGTTCTTGATTATGCTAGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCTGCGACCATG
CTAATTAACCATCTGCCGACTATCTTTTTATCCCTCTGTGGACTTAGTTTGGTGGCGGTCTTGGCTGGTATGGTTTGGTT
TCGCAAAACCAACAAAATCAAGGCATTTTCCCGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAATCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGAAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGTGGCGAGTTGACA
GTTTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGTTGATTCAACCGCTGGTCTTTCT
CTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(222-283)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

53.216

100

0.628
  comYB Streptococcus mutans UA140

49.56

100

0.583
  comYB Streptococcus mutans UA159

49.56

100

0.583
  comGB/cglB Streptococcus mitis NCTC 12261

49.254

100

0.569
  comGB/cglB Streptococcus mitis SK321

49.107

100

0.569
  comGB/cglB Streptococcus pneumoniae Rx1

48.955

100

0.566
  comGB/cglB Streptococcus pneumoniae D39

48.955

100

0.566
  comGB/cglB Streptococcus pneumoniae R6

48.955

100

0.566
  comGB/cglB Streptococcus pneumoniae TIGR4

48.955

100

0.566
  comGB Lactococcus lactis subsp. cremoris KW2

44.214

100

0.514

Multiple sequence alignment