Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JL11_RS07475 Genome accession   NZ_CP012897
Coordinates   1569449..1569943 (+) Length   164 a.a.
NCBI ID   WP_054766868.1    Uniprot ID   -
Organism   Brevundimonas sp. DS20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1564449..1574943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL11_RS07460 (JL11_07460) - 1565372..1568074 (+) 2703 WP_054765104.1 hypothetical protein -
  JL11_RS07465 (JL11_07465) - 1568153..1568839 (+) 687 WP_054765105.1 hypothetical protein -
  JL11_RS07470 (JL11_07470) - 1568839..1569261 (+) 423 WP_054765106.1 hypothetical protein -
  JL11_RS07475 (JL11_07475) ssb 1569449..1569943 (+) 495 WP_054766868.1 single-stranded DNA-binding protein Machinery gene
  JL11_RS07480 (JL11_07480) - 1569992..1570408 (+) 417 WP_227976080.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  JL11_RS07485 (JL11_07485) - 1570405..1571706 (+) 1302 WP_054765108.1 SDR family oxidoreductase -
  JL11_RS07490 (JL11_07490) - 1571703..1572173 (+) 471 WP_054765109.1 DUF2269 domain-containing protein -
  JL11_RS07495 (JL11_07495) - 1572177..1572557 (-) 381 WP_054765110.1 PIN domain-containing protein -
  JL11_RS17670 (JL11_07500) - 1572554..1572832 (-) 279 WP_054765111.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  JL11_RS07505 (JL11_07505) - 1572929..1573852 (+) 924 WP_054765112.1 DMT family transporter -
  JL11_RS07510 (JL11_07510) - 1573882..1574412 (+) 531 WP_054765113.1 DUF1003 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17841.70 Da        Isoelectric Point: 5.9696

>NTDB_id=158092 JL11_RS07475 WP_054766868.1 1569449..1569943(+) (ssb) [Brevundimonas sp. DS20]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSTGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYV
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGASQGGGYGGGRGDDDYSSGFSTGGANRPSGPKESYDLND
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=158092 JL11_RS07475 WP_054766868.1 1569449..1569943(+) (ssb) [Brevundimonas sp. DS20]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGCGATCCTGAAATCCGGTCGATGCCGAACGGCGA
CCGCATCGCCAACCTGTCCATCGCCACCTCGGAAACCTGGCGCGACAAGTCGACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAGGTGGTCGAGAACTATGTGAAGAAGGGCTCGACCGTCTATGTC
GAGGGCGCGCTCCAGACCCGGAAGTGGACCGACCAGCAGGGCGTGGAGAAATATTCGACCGAGATCGTGGTCAGCCGCTT
CAAGGGCGAACTGACCATGCTGGGCGGCCGGTCCGAGGGCGGCGCCTCTCAGGGCGGCGGCTACGGCGGCGGTCGCGGCG
ACGACGACTATTCCTCGGGCTTCTCCACCGGCGGCGCCAACCGCCCCAGCGGCCCCAAGGAAAGCTACGACCTGAACGAC
GACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.549
  ssb Vibrio cholerae strain A1552

47.977

100

0.506
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.451
  ssb Neisseria meningitidis MC58

41.341

100

0.451

Multiple sequence alignment