Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AOT11_RS08630 | Genome accession | NZ_CP012881 |
| Coordinates | 1850314..1850904 (+) | Length | 196 a.a. |
| NCBI ID | WP_017419657.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus NBRC 15645 = ATCC 27562 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1845314..1855904
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOT11_RS08615 (AOT11_15650) | oxyR | 1845696..1846595 (+) | 900 | WP_026050199.1 | DNA-binding transcriptional regulator OxyR | - |
| AOT11_RS08620 (AOT11_15655) | - | 1846664..1849177 (-) | 2514 | WP_017419655.1 | penicillin-binding protein 1A | - |
| AOT11_RS08625 (AOT11_15660) | pilM | 1849317..1850324 (+) | 1008 | WP_017419656.1 | type IV pilus assembly protein PilM | Machinery gene |
| AOT11_RS08630 (AOT11_15665) | pilN | 1850314..1850904 (+) | 591 | WP_017419657.1 | PilN domain-containing protein | Machinery gene |
| AOT11_RS08635 (AOT11_15670) | pilO | 1850897..1851487 (+) | 591 | WP_011079354.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AOT11_RS08640 (AOT11_15675) | pilP | 1851477..1851989 (+) | 513 | WP_017419659.1 | pilus assembly protein PilP | Machinery gene |
| AOT11_RS08645 (AOT11_15680) | pilQ | 1852003..1853787 (+) | 1785 | WP_017419660.1 | type IV pilus secretin PilQ | Machinery gene |
| AOT11_RS08650 (AOT11_15685) | aroK | 1854027..1854545 (+) | 519 | WP_011079357.1 | shikimate kinase AroK | - |
| AOT11_RS08655 (AOT11_15690) | aroB | 1854578..1855669 (+) | 1092 | WP_011079358.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22644.86 Da Isoelectric Point: 7.6441
>NTDB_id=158028 AOT11_RS08630 WP_017419657.1 1850314..1850904(+) (pilN) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGVQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSSFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGVQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSSFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
Nucleotide
Download Length: 591 bp
>NTDB_id=158028 AOT11_RS08630 WP_017419657.1 1850314..1850904(+) (pilN) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCTTGATCGCGGTCGGTGTTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATTCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATTCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAGCGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAGCTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCAGGTATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCTCCTTCCTGAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCTTGATCGCGGTCGGTGTTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATTCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATTCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAGCGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAGCTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCAGGTATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCTCCTTCCTGAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
68.508 |
92.347 |
0.633 |
| pilN | Vibrio cholerae strain A1552 |
63.277 |
90.306 |
0.571 |