Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AOT11_RS02330 | Genome accession | NZ_CP012881 |
| Coordinates | 536498..536800 (-) | Length | 100 a.a. |
| NCBI ID | WP_017420947.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus NBRC 15645 = ATCC 27562 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 531498..541800
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOT11_RS02305 (AOT11_09465) | - | 532041..533255 (+) | 1215 | WP_017420942.1 | pyridoxal phosphate-dependent aminotransferase | - |
| AOT11_RS02310 (AOT11_09470) | yfbR | 533336..533920 (+) | 585 | WP_017420943.1 | 5'-deoxynucleotidase | - |
| AOT11_RS02315 (AOT11_09475) | - | 533926..535257 (+) | 1332 | WP_017420944.1 | anti-phage deoxyguanosine triphosphatase | - |
| AOT11_RS02320 (AOT11_09480) | - | 535279..535887 (-) | 609 | WP_017420945.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AOT11_RS02325 (AOT11_09485) | rrtA | 535891..536451 (+) | 561 | WP_277986152.1 | rhombosortase | - |
| AOT11_RS02330 (AOT11_09490) | comEA | 536498..536800 (-) | 303 | WP_017420947.1 | ComEA family DNA-binding protein | Machinery gene |
| AOT11_RS02335 (AOT11_09495) | ppiD | 536933..538792 (-) | 1860 | WP_026050445.1 | peptidylprolyl isomerase | - |
| AOT11_RS02340 (AOT11_09500) | - | 538969..539241 (-) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| AOT11_RS02345 (AOT11_09505) | lon | 539435..541786 (-) | 2352 | WP_017420949.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10923.76 Da Isoelectric Point: 9.6577
>NTDB_id=158013 AOT11_RS02330 WP_017420947.1 536498..536800(-) (comEA) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=158013 AOT11_RS02330 WP_017420947.1 536498..536800(-) (comEA) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTTTCTTTTCCTTCCGTTTCTTTTGCAGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGCATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTTTCTTTTCCTTCCGTTTCTTTTGCAGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGCATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
60 |
100 |
0.6 |
| comEA | Vibrio campbellii strain DS40M4 |
55 |
100 |
0.55 |
| comEA | Vibrio cholerae C6706 |
51.02 |
98 |
0.5 |
| comEA | Vibrio cholerae strain A1552 |
51.02 |
98 |
0.5 |