Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AO356_RS16025 | Genome accession | NZ_CP012831 |
| Coordinates | 3617233..3618102 (-) | Length | 289 a.a. |
| NCBI ID | WP_060740578.1 | Uniprot ID | A0A2K4FK64 |
| Organism | Pseudomonas fluorescens strain FW300-N2C3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3612233..3623102
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AO356_RS15985 (AO356_15965) | - | 3612576..3613874 (-) | 1299 | WP_060740574.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| AO356_RS15990 (AO356_15970) | - | 3613935..3614108 (-) | 174 | WP_039593877.1 | DUF3094 family protein | - |
| AO356_RS15995 (AO356_15975) | - | 3614161..3614688 (-) | 528 | WP_060740575.1 | MOSC domain-containing protein | - |
| AO356_RS16000 (AO356_15980) | - | 3614685..3615311 (-) | 627 | WP_025215531.1 | DUF1780 domain-containing protein | - |
| AO356_RS16005 (AO356_15985) | - | 3615445..3616131 (+) | 687 | WP_060740576.1 | energy-coupling factor ABC transporter permease | - |
| AO356_RS16010 (AO356_15990) | - | 3616195..3616410 (+) | 216 | WP_053125334.1 | hypothetical protein | - |
| AO356_RS16015 (AO356_15995) | yacG | 3616407..3616613 (-) | 207 | WP_057450865.1 | DNA gyrase inhibitor YacG | - |
| AO356_RS16020 (AO356_16000) | coaE | 3616610..3617233 (-) | 624 | WP_060740577.1 | dephospho-CoA kinase | - |
| AO356_RS16025 (AO356_16005) | pilD | 3617233..3618102 (-) | 870 | WP_060740578.1 | prepilin peptidase | Machinery gene |
| AO356_RS16030 (AO356_16010) | pilC | 3618104..3619321 (-) | 1218 | WP_060740579.1 | type II secretion system F family protein | Machinery gene |
| AO356_RS16035 (AO356_16015) | pilB | 3619324..3621033 (-) | 1710 | WP_060740580.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AO356_RS16040 (AO356_16020) | - | 3621257..3621667 (+) | 411 | WP_060743129.1 | pilin | - |
| AO356_RS16045 (AO356_16025) | - | 3621936..3622289 (+) | 354 | WP_053125323.1 | BON domain-containing protein | - |
| AO356_RS16050 (AO356_16030) | - | 3622620..3622916 (-) | 297 | WP_060740581.1 | DUF2845 domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31815.96 Da Isoelectric Point: 7.7294
>NTDB_id=157822 AO356_RS16025 WP_060740578.1 3617233..3618102(-) (pilD) [Pseudomonas fluorescens strain FW300-N2C3]
MPLSEFLVLYPVAFVLVAALLGLIVGSFLNVVVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGKRYPLTEVACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFLVLYPVAFVLVAALLGLIVGSFLNVVVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGKRYPLTEVACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=157822 AO356_RS16025 WP_060740578.1 3617233..3618102(-) (pilD) [Pseudomonas fluorescens strain FW300-N2C3]
ATGCCCCTGAGCGAATTTCTCGTGCTGTATCCCGTGGCTTTCGTGCTTGTTGCGGCATTGCTCGGCCTGATCGTCGGCAG
CTTCCTCAACGTGGTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAAGCCCACGACCTGTTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTCATGCTGCCCCATTCCCAATGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAGAACATTCCGCTGTTGAGCTACCTGATGCTGCGTGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAAGCG
TTACCCCCTGACCGAAGTGGCCTGCGGCGCATTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGCTGCCCGATACCCTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTATTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCTTGCGTGATGCGCCCGGGTCGACGCAGATCCCCTTCGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTTCTCGTGCTGTATCCCGTGGCTTTCGTGCTTGTTGCGGCATTGCTCGGCCTGATCGTCGGCAG
CTTCCTCAACGTGGTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAAGCCCACGACCTGTTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTCATGCTGCCCCATTCCCAATGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAGAACATTCCGCTGTTGAGCTACCTGATGCTGCGTGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAAGCG
TTACCCCCTGACCGAAGTGGCCTGCGGCGCATTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGCTGCCCGATACCCTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTATTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCTTGCGTGATGCGCCCGGGTCGACGCAGATCCCCTTCGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.817 |
98.27 |
0.519 |
| pilD | Vibrio campbellii strain DS40M4 |
51.228 |
98.616 |
0.505 |
| pilD | Neisseria gonorrhoeae MS11 |
47.735 |
99.308 |
0.474 |
| pilD | Acinetobacter nosocomialis M2 |
48.364 |
95.156 |
0.46 |
| pilD | Acinetobacter baumannii D1279779 |
48.364 |
95.156 |
0.46 |