Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOY20_RS04975 Genome accession   NZ_CP012808
Coordinates   1077419..1078000 (+) Length   193 a.a.
NCBI ID   WP_054580839.1    Uniprot ID   A0A0N9VCW8
Organism   Acinetobacter equi strain 114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1072419..1083000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS04950 (AOY20_04950) - 1072838..1073221 (-) 384 WP_054580834.1 hypothetical protein -
  AOY20_RS04955 (AOY20_04955) - 1073343..1073693 (+) 351 WP_054580835.1 GlpM family protein -
  AOY20_RS04960 (AOY20_04960) tenA 1073761..1074432 (-) 672 WP_054580836.1 thiaminase II -
  AOY20_RS04965 (AOY20_04965) - 1074765..1075844 (+) 1080 WP_054580837.1 DUF475 domain-containing protein -
  AOY20_RS04970 (AOY20_04970) - 1076003..1077367 (+) 1365 WP_054580838.1 MFS transporter -
  AOY20_RS04975 (AOY20_04975) ssb 1077419..1078000 (+) 582 WP_054580839.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21431.18 Da        Isoelectric Point: 7.2004

>NTDB_id=157751 AOY20_RS04975 WP_054580839.1 1077419..1078000(+) (ssb) [Acinetobacter equi strain 114]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKTSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEQGQPEQPRFNNNQGNSYGNQGGYNKNQGNNYGNQAGYANNNNQA
NGYANNNPSGFAPKTAATPAAAAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=157751 AOY20_RS04975 WP_054580839.1 1077419..1078000(+) (ssb) [Acinetobacter equi strain 114]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTAGGTCGAGATCCTGAAACAAAAACTTTTCCAAATGGGGGGTC
ATTGACTCAATTTTCAATTGCGACAAGTGAGTCTTGGACAGATAAAACCTCTGGTGAACGTAAAGAACAAACAGAATGGC
ATCGTATTGTATTGCACAACCGTTTAGGTGAAATTGCACAGCAATATTTACGTAAAGGTTCTAAAGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACGACAGAAATTCGTGGCGAACAGATGCAAAT
GCTAGATAGTAATCGCCAACAAGGGGAACAAGGTCAACCTGAGCAACCAAGGTTTAATAATAATCAAGGCAATAGCTATG
GAAACCAAGGTGGCTATAATAAAAACCAAGGTAATAACTATGGTAATCAAGCAGGTTATGCAAACAATAATAACCAAGCT
AATGGTTATGCAAATAATAACCCGAGTGGTTTTGCACCAAAAACAGCTGCAACACCAGCTGCAGCGGCTCCTGCAGATTT
AGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N9VCW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.777

100

0.529
  ssb Vibrio cholerae strain A1552

43.878

100

0.446
  ssb Neisseria meningitidis MC58

39.286

100

0.399
  ssb Neisseria gonorrhoeae MS11

39.286

100

0.399

Multiple sequence alignment