Detailed information NTG0156272

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AOC03_RS06760
• Genome accession: NZ_CP012678
• Coordinates: 1561938..1562837 (-)
• Length: 299 a.a.
• NCBI ID: WP_062534451.1
• Uniprot ID: A0A0M4TCS8
• Organism: Psychrobacter urativorans strain R310.10B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1556938..1567837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOC03_RS06735 (AOC03_06720)	-	1556942..1557505 (-)	564	WP_062534442.1	YqgE/AlgH family protein	-
AOC03_RS06740 (AOC03_06725)	recN	1557654..1559336 (-)	1683	WP_062534444.1	DNA repair protein RecN	-
AOC03_RS06745 (AOC03_06730)	-	1559977..1560312 (+)	336	WP_062534446.1	pyrimidine/purine nucleoside phosphorylase	-
AOC03_RS06750 (AOC03_06735)	rlmB	1560410..1561180 (+)	771	WP_062534447.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AOC03_RS06755 (AOC03_06740)	coaE	1561143..1561844 (-)	702	WP_062534449.1	dephospho-CoA kinase	-
AOC03_RS06760 (AOC03_06745)	pilD	1561938..1562837 (-)	900	WP_062534451.1	prepilin peptidase	Machinery gene
AOC03_RS06765 (AOC03_06750)	pilC	1562874..1564097 (-)	1224	WP_062534453.1	type II secretion system F family protein	Machinery gene
AOC03_RS06770 (AOC03_06755)	pilB	1564301..1566019 (-)	1719	WP_062534456.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AOC03_RS06775 (AOC03_06760)	tpiA	1566382..1567203 (+)	822	WP_062534458.1	triose-phosphate isomerase	-
AOC03_RS06780 (AOC03_06765)	secG	1567415..1567723 (+)	309	WP_062534460.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 32779.21 Da
• Isoelectric Point: 7.9704

>NTDB_id=156272 AOC03_RS06760 WP_062534451.1 1561938..1562837(-) (pilD) [Psychrobacter urativorans strain R310.10B]
MQLIELLQDNMSMALVVFTLLGLCVGSFLNVVIHRIPLMMHYAWRQECSQFLAQQSDMPSEQTTVLTDIVAKDAPITLST
PASRCPHCAHKIKWYENIPLISWLLLRGRCSDCKAAIGVRYPVVELVTALLSGLVIYHFGVTATGLSALILVWTLIALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQGWFVTPTQSIWGLLLGFLSLWVVVKIFYLITKKHGMGQGDFKLLAVLGAWLGPA
MLPLIILLSSLLGSIVGIILMKKQGESKPFAFGPYIAIAGIIALLYGSDIVSWYLGMYA

Nucleotide

• Length: 900 bp

>NTDB_id=156272 AOC03_RS06760 WP_062534451.1 1561938..1562837(-) (pilD) [Psychrobacter urativorans strain R310.10B]
ATGCAATTAATAGAATTATTACAAGATAACATGAGTATGGCGCTCGTCGTCTTTACTCTTTTGGGGCTTTGTGTCGGCAG
TTTTTTAAATGTTGTGATTCACCGTATACCCCTCATGATGCATTACGCATGGCGGCAAGAATGCAGTCAGTTTTTAGCGC
AGCAAAGCGATATGCCCAGTGAGCAGACTACGGTACTAACCGATATCGTGGCTAAAGATGCGCCCATCACCTTAAGCACA
CCCGCCTCACGCTGTCCGCACTGCGCCCATAAGATTAAATGGTATGAAAATATACCGTTAATCAGCTGGCTGCTATTACG
TGGACGTTGCTCAGACTGCAAAGCGGCTATCGGAGTGCGCTACCCTGTCGTTGAGCTGGTCACTGCCCTGCTTTCAGGTT
TGGTTATTTATCATTTTGGGGTCACTGCTACTGGATTGTCTGCCTTAATATTGGTATGGACGCTGATTGCGCTCACGGGG
ATTGATTTTGATACGCAGTTATTACCTGATCGTCTGACCTTTCCTTTAGCAGGATTGGGCTTAGCCGTAAACTCACAAGG
CTGGTTCGTGACGCCCACTCAGTCTATTTGGGGCTTATTATTAGGGTTTTTATCACTGTGGGTAGTGGTTAAAATCTTTT
ATTTAATAACCAAAAAACATGGCATGGGACAAGGTGATTTTAAATTATTAGCGGTATTGGGTGCGTGGCTTGGTCCTGCA
ATGTTACCGTTAATCATTTTACTATCCTCTCTACTTGGTTCGATAGTCGGTATTATTTTAATGAAAAAGCAAGGTGAAAG
TAAGCCCTTTGCGTTTGGTCCTTATATTGCTATTGCGGGTATAATTGCCTTATTATACGGCTCAGATATTGTCAGCTGGT
ACTTAGGGATGTACGCTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-139)

• Type IV leader peptidase family (Peptidase_A24) (149-258)

3D structure

• AlphaFold DB: A0A0M4TCS8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	52.881	98.662	0.522
pilD	Acinetobacter baumannii D1279779	52.203	98.662	0.515
pilD	Vibrio campbellii strain DS40M4	46.128	99.331	0.458
pilD	Vibrio cholerae strain A1552	48.057	94.649	0.455
pilD	Neisseria gonorrhoeae MS11	43.011	93.311	0.401