Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AOC03_RS06765 Genome accession   NZ_CP012678
Coordinates   1562874..1564097 (-) Length   407 a.a.
NCBI ID   WP_062534453.1    Uniprot ID   A0A0M4T7T8
Organism   Psychrobacter urativorans strain R310.10B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557874..1569097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC03_RS06745 (AOC03_06730) - 1559977..1560312 (+) 336 WP_062534446.1 pyrimidine/purine nucleoside phosphorylase -
  AOC03_RS06750 (AOC03_06735) rlmB 1560410..1561180 (+) 771 WP_062534447.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AOC03_RS06755 (AOC03_06740) coaE 1561143..1561844 (-) 702 WP_062534449.1 dephospho-CoA kinase -
  AOC03_RS06760 (AOC03_06745) pilD 1561938..1562837 (-) 900 WP_062534451.1 prepilin peptidase Machinery gene
  AOC03_RS06765 (AOC03_06750) pilC 1562874..1564097 (-) 1224 WP_062534453.1 type II secretion system F family protein Machinery gene
  AOC03_RS06770 (AOC03_06755) pilB 1564301..1566019 (-) 1719 WP_062534456.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AOC03_RS06775 (AOC03_06760) tpiA 1566382..1567203 (+) 822 WP_062534458.1 triose-phosphate isomerase -
  AOC03_RS06780 (AOC03_06765) secG 1567415..1567723 (+) 309 WP_062534460.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44605.46 Da        Isoelectric Point: 9.7210

>NTDB_id=156273 AOC03_RS06765 WP_062534453.1 1562874..1564097(-) (pilC) [Psychrobacter urativorans strain R310.10B]
MAKAKTDMLLDFVYDGVNRRGQNIKGETTSRSLELAKATLRKQGITVKSIKKKAKPLFTFKKGIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKELVLQIKADIEAGGTFASALRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVIVVAVIVTIILLVKVVPVFSGLFESFGAELPAFTQMVVSMSEWMQAWWFVLIIIIGGTIVSF
SEAKKRSKKFRDFLDRATLKAPIFGNIAYQAIIARFSRTLATTFAAGVPLIDALDSTAGATNNVVFYNATQQIKNDVSTG
QQLQFSMRSTNLFPSLAIQMVGIGEESGSLEDMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLIGGLVIAMYLPIF
QMGAVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=156273 AOC03_RS06765 WP_062534453.1 1562874..1564097(-) (pilC) [Psychrobacter urativorans strain R310.10B]
ATGGCAAAAGCAAAGACTGACATGCTATTGGACTTTGTCTATGACGGCGTCAATCGGCGTGGACAAAATATAAAGGGTGA
AACCACCAGCCGCAGTTTGGAGTTGGCAAAAGCCACCTTACGCAAACAAGGTATTACCGTTAAGAGCATCAAGAAAAAGG
CTAAACCCTTATTTACCTTTAAAAAAGGTATTAAGCCGATTGATATTGCCATTTTTGCGCGGCAACTGGCAACGATGATG
AAAGCGGGTGTGCCATTGACTCAATCGTTTGAGATTGTTGCCGACTCGCTGGACAATCCCAGCATGAAAGAATTGGTATT
ACAAATTAAAGCCGATATTGAAGCGGGTGGTACTTTTGCGTCGGCGCTGCGTCGCCATCCTCGTTACTTTGATGACCTAT
TTTGCTCTCTTGTCGATTCTGGTGAGCAATCAGGGGCGCTCGAAACCATGCTAGAGCGTGTCGCCACTTATAAAGAAAAA
AGTGAGCTGCTGAAAGCCAAAATTAAAAAAGCAATGAAGTATCCTATCGCCGTTATTGTAGTGGCAGTGATTGTGACGAT
AATTTTGCTGGTCAAGGTGGTTCCCGTATTCTCAGGATTGTTTGAATCTTTTGGTGCTGAGCTACCTGCTTTTACCCAGA
TGGTGGTGAGCATGTCTGAATGGATGCAGGCGTGGTGGTTCGTGTTAATTATTATCATTGGTGGCACTATTGTGAGCTTT
TCTGAAGCTAAAAAGCGCAGTAAAAAGTTCCGCGACTTTTTAGATCGGGCAACACTAAAAGCACCGATATTTGGCAATAT
TGCTTATCAAGCGATTATCGCGCGGTTTTCTCGTACCTTAGCCACTACTTTTGCCGCTGGTGTACCTCTCATTGATGCCT
TAGATTCTACGGCTGGCGCAACCAATAACGTAGTTTTTTATAACGCCACCCAACAGATAAAAAATGATGTCTCTACCGGG
CAGCAATTACAGTTTTCAATGCGCTCTACCAACTTATTCCCAAGTCTCGCCATTCAAATGGTGGGCATTGGTGAAGAATC
AGGTAGTTTAGAGGATATGCTCGACAAGGTAGCCGTCTATTACGAAAATGAAGTGGATAACGCCGTTGATGGTTTGACCA
GTTTGATGGAACCCATGATTATGGCGGTGCTTGGGGTATTAATCGGTGGTTTGGTCATTGCGATGTATTTGCCAATCTTC
CAGATGGGTGCAGTGGTAGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4T7T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.588

100

0.708
  pilC Acinetobacter baylyi ADP1

67.892

100

0.681
  pilC Pseudomonas stutzeri DSM 10701

64.051

97.052

0.622
  pilC Legionella pneumophila strain ERS1305867

55.639

98.034

0.545
  pilC Vibrio cholerae strain A1552

42.647

100

0.428
  pilG Neisseria meningitidis 44/76-A

43.687

97.297

0.425
  pilG Neisseria gonorrhoeae MS11

43.687

97.297

0.425
  pilC Vibrio campbellii strain DS40M4

41.235

99.509

0.41

Multiple sequence alignment