Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AOC03_RS04945 Genome accession   NZ_CP012678
Coordinates   1135888..1136943 (-) Length   351 a.a.
NCBI ID   WP_062533869.1    Uniprot ID   A0A0M4U4B6
Organism   Psychrobacter urativorans strain R310.10B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130888..1141943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC03_RS04925 (AOC03_04915) pilQ 1131424..1133916 (-) 2493 WP_062533863.1 type IV pilus secretin PilQ -
  AOC03_RS04930 (AOC03_04920) - 1133944..1134492 (-) 549 WP_062533864.1 pilus assembly protein PilP -
  AOC03_RS04935 (AOC03_04925) - 1134492..1135226 (-) 735 WP_062533865.1 type 4a pilus biogenesis protein PilO -
  AOC03_RS04940 (AOC03_04930) - 1135223..1135888 (-) 666 WP_062533867.1 PilN domain-containing protein -
  AOC03_RS04945 (AOC03_04935) comM 1135888..1136943 (-) 1056 WP_062533869.1 pilus assembly protein PilM Machinery gene
  AOC03_RS04950 (AOC03_04940) - 1137142..1139817 (+) 2676 WP_062533870.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38381.74 Da        Isoelectric Point: 4.3597

>NTDB_id=156265 AOC03_RS04945 WP_062533869.1 1135888..1136943(-) (comM) [Psychrobacter urativorans strain R310.10B]
MRLFSPRGRHLVGVDVCATSVKIVDIQRQQGIFHLKSYGIERLLPGAVVDKLIIDTEAVGDALSLLARRCQVSGSDAATA
VSGSSVITKIIDMDMALSDVEREAQIRLDADQYIPYPLEEVNLDFEVLGPSLIGDNLVQVLLAASRSENVEQRVDALTFG
GLKTKIMDIESHAIERAYGLMVDSLSDMPELVALVDIGHNQTTLYVAKNGEFVYSREQLFGGAQLTEAIQNRYGLSFEEA
TVNKRERTLPDDYYPEILTPFMEGAIQQITRSLQFYFSSSQYNNIDHVVLAGGSSSIPGLAGMVQQKLGVPVTVANPFIN
MTIDPYIDSEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=156265 AOC03_RS04945 WP_062533869.1 1135888..1136943(-) (comM) [Psychrobacter urativorans strain R310.10B]
GTGAGACTATTTTCTCCCAGAGGTCGACATTTAGTTGGGGTAGATGTCTGCGCCACCTCAGTAAAGATCGTTGACATACA
ACGACAGCAAGGAATATTCCACCTGAAATCTTATGGTATCGAAAGATTACTGCCAGGTGCTGTGGTGGATAAGCTGATTA
TAGATACTGAGGCAGTTGGTGATGCGCTATCATTGTTAGCCAGACGTTGTCAGGTAAGTGGTAGCGATGCGGCTACTGCA
GTTTCAGGCTCGTCAGTGATTACTAAAATCATTGATATGGATATGGCACTTAGTGATGTCGAGCGTGAGGCTCAAATTCG
TTTAGATGCGGATCAGTACATTCCTTACCCATTAGAAGAGGTCAATCTTGACTTTGAGGTATTGGGTCCGTCGCTGATAG
GTGACAATCTAGTACAAGTGTTGCTAGCCGCTTCGCGTTCAGAAAACGTCGAACAGCGTGTTGATGCGCTGACCTTTGGT
GGGCTAAAAACTAAAATCATGGATATTGAGTCACACGCTATTGAGCGCGCCTATGGGCTGATGGTTGACTCTCTTAGTGA
TATGCCAGAATTAGTGGCTTTGGTCGATATTGGTCATAATCAAACCACTTTATATGTTGCCAAAAATGGTGAGTTTGTTT
ATAGCCGTGAACAACTTTTTGGTGGTGCACAGTTGACTGAGGCGATTCAAAATCGTTATGGCTTATCCTTTGAAGAGGCG
ACTGTTAATAAGCGTGAGCGTACGCTACCCGATGATTATTATCCAGAAATACTGACGCCTTTTATGGAAGGTGCTATCCA
ACAGATTACACGCTCTTTACAATTTTACTTTTCTTCCAGTCAATATAATAATATTGACCATGTGGTGTTAGCTGGTGGTA
GTAGCTCTATTCCTGGTCTTGCAGGTATGGTGCAACAAAAGTTGGGTGTACCGGTCACTGTCGCCAACCCTTTTATTAAT
ATGACAATTGATCCTTATATAGACAGTGAGCAGCTGGCAATTGATGCCCCAAGCTTAATGGCTGCGTGTGGTCTGGCATT
AAGGAGCTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4U4B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.567

100

0.516
  pilM Acinetobacter baumannii D1279779

51.282

100

0.513
  comM Acinetobacter baylyi ADP1

48.718

100

0.487
  pilM Legionella pneumophila strain ERS1305867

40.227

100

0.405

Multiple sequence alignment