Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOC04_RS22835 Genome accession   NZ_CP012676
Coordinates   5072486..5073025 (+) Length   179 a.a.
NCBI ID   WP_060696761.1    Uniprot ID   -
Organism   Pseudomonas versuta strain L10.10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5067486..5078025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC04_RS22825 (AOC04_22805) uvrA 5068054..5070888 (-) 2835 WP_060696759.1 excinuclease ABC subunit UvrA -
  AOC04_RS22830 (AOC04_22810) - 5071085..5072476 (+) 1392 WP_060696760.1 MFS transporter -
  AOC04_RS22835 (AOC04_22815) ssb 5072486..5073025 (+) 540 WP_060696761.1 single-stranded DNA-binding protein Machinery gene
  AOC04_RS22840 (AOC04_22820) - 5073317..5075428 (+) 2112 WP_060696762.1 mechanosensitive ion channel family protein -
  AOC04_RS22845 (AOC04_22825) - 5075575..5076459 (+) 885 WP_060696763.1 sugar nucleotide-binding protein -
  AOC04_RS22850 (AOC04_22830) - 5076452..5077381 (+) 930 WP_060696764.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20112.24 Da        Isoelectric Point: 5.9314

>NTDB_id=156252 AOC04_RS22835 WP_060696761.1 5072486..5073025(+) (ssb) [Pseudomonas versuta strain L10.10]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQNQGGGNNYQQQQSAPRQQAQRPAPQQQQQPQQQQSRPAPQ
QQAPQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=156252 AOC04_RS22835 WP_060696761.1 5072486..5073025(+) (ssb) [Pseudomonas versuta strain L10.10]
ATGGCCCGTGGGGTTAACAAAGTTATATTGGTCGGCACGTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACAGACAAGCAAACCGGCCAGAAAGTCGAAAAGACTGAAT
GGCACCGCGTATCGATGTTCGGCAAAGTTGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGTTGCAAACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGTGGGCGTCCACAAGGCGACCAACAAAACCAGGGCGGTGGTAACAACTACCAGCAACAGCAGTCTG
CTCCGCGTCAACAGGCTCAACGTCCTGCACCGCAACAGCAACAGCAGCCTCAACAGCAGCAGTCGCGTCCAGCTCCGCAG
CAGCAGGCACCCCAGCCAGCACCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.592
  ssb Neisseria gonorrhoeae MS11

48.901

100

0.497
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.497
  ssb Neisseria meningitidis MC58

48.352

100

0.492

Multiple sequence alignment