Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMC99_RS10410 Genome accession   NZ_CP012669
Coordinates   2090044..2090562 (-) Length   172 a.a.
NCBI ID   WP_061926312.1    Uniprot ID   A0A0M4MX24
Organism   Altererythrobacter epoxidivorans strain CGMCC 1.7731     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2085044..2095562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMC99_RS10380 (AMC99_02127) - 2085930..2086334 (-) 405 WP_061926299.1 ACT domain-containing protein -
  AMC99_RS10385 (AMC99_02128) hslU 2086331..2087632 (-) 1302 WP_061926301.1 ATP-dependent protease ATPase subunit HslU -
  AMC99_RS10390 (AMC99_02129) hslV 2087648..2088220 (-) 573 WP_061926303.1 ATP-dependent protease subunit HslV -
  AMC99_RS10395 (AMC99_02130) - 2088292..2088714 (-) 423 WP_232301385.1 outer membrane protein assembly factor BamE -
  AMC99_RS10400 (AMC99_02131) - 2088939..2089454 (+) 516 WP_061926308.1 ubiquinol-cytochrome C chaperone family protein -
  AMC99_RS10405 (AMC99_02132) - 2089451..2089990 (+) 540 WP_061926310.1 YceD family protein -
  AMC99_RS10410 (AMC99_02133) ssb 2090044..2090562 (-) 519 WP_061926312.1 single-stranded DNA-binding protein Machinery gene
  AMC99_RS10415 (AMC99_02134) feoB 2090578..2092434 (-) 1857 WP_061926314.1 ferrous iron transporter B -
  AMC99_RS10420 (AMC99_02135) - 2092431..2092682 (-) 252 WP_061926316.1 FeoA family protein -
  AMC99_RS10425 (AMC99_02136) - 2092743..2093414 (-) 672 WP_061926318.1 COQ9 family protein -
  AMC99_RS10430 (AMC99_02137) - 2093417..2094037 (-) 621 WP_061926320.1 ankyrin repeat domain-containing protein -
  AMC99_RS10435 (AMC99_02138) - 2094108..2094731 (+) 624 WP_232301386.1 SCO family protein -
  AMC99_RS10440 (AMC99_02139) - 2094719..2095159 (+) 441 WP_061926322.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17717.27 Da        Isoelectric Point: 5.2440

>NTDB_id=156168 AMC99_RS10410 WP_061926312.1 2090044..2090562(-) (ssb) [Altererythrobacter epoxidivorans strain CGMCC 1.7731]
MAGSLNKVMLIGNLGADPEIRTFQNGGKVANLRIATSETWKDRNTGERQERTEWHTVAIFSEGLVGVVERFLKKGSKVYI
EGQLQTRKWQDQSGNDRYSTEVVIRGLNGTLTMLDGASGGGGGGGQRGGGYGGGSGGGNGGSGGGWNQGGGGSGGSQGGG
SNYDDLDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=156168 AMC99_RS10410 WP_061926312.1 2090044..2090562(-) (ssb) [Altererythrobacter epoxidivorans strain CGMCC 1.7731]
ATGGCCGGGTCTCTCAACAAGGTAATGCTTATCGGTAACCTGGGAGCCGATCCGGAAATCCGCACTTTCCAGAACGGCGG
CAAGGTCGCCAACCTGCGCATCGCGACCAGCGAAACCTGGAAGGATCGCAATACCGGCGAACGCCAGGAACGTACCGAAT
GGCACACCGTCGCCATCTTTTCGGAAGGTCTGGTCGGCGTCGTCGAGCGTTTCCTCAAGAAAGGCTCGAAGGTTTACATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGTCGGGCAATGACCGCTATTCGACAGAGGTTGTCATCCGCGGCCT
CAACGGCACGCTGACGATGCTCGACGGAGCCAGCGGCGGCGGCGGTGGCGGTGGCCAGCGCGGCGGCGGTTATGGCGGTG
GTTCGGGTGGCGGCAACGGCGGTTCGGGCGGTGGCTGGAACCAGGGCGGTGGCGGCTCGGGGGGCAGCCAGGGCGGCGGC
TCGAACTACGACGATCTGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4MX24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.445

100

0.517
  ssb Glaesserella parasuis strain SC1401

45.161

100

0.488
  ssb Neisseria meningitidis MC58

36.872

100

0.384
  ssb Neisseria gonorrhoeae MS11

36.872

100

0.384

Multiple sequence alignment