Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LLUC11_RS04995 Genome accession   NZ_CP015904
Coordinates   1007472..1008152 (+) Length   226 a.a.
NCBI ID   WP_017864419.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1002472..1013152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC11_RS04975 (LLUC11_0955) - 1002836..1003351 (+) 516 WP_081199521.1 DUF2127 domain-containing protein -
  LLUC11_RS04980 (LLUC11_0956) - 1003355..1004680 (+) 1326 WP_003131891.1 cell wall metabolism sensor histidine kinase WalK -
  LLUC11_RS04985 (LLUC11_0957) - 1004687..1005343 (+) 657 WP_082225074.1 phosphatase PAP2 family protein -
  LLUC11_RS04990 (LLUC11_0958) glmS 1005524..1007341 (+) 1818 WP_012897626.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LLUC11_RS04995 (LLUC11_0959) radC 1007472..1008152 (+) 681 WP_017864419.1 DNA repair protein RadC Machinery gene
  LLUC11_RS05000 (LLUC11_0960) - 1008239..1008889 (-) 651 WP_017864420.1 redox-sensing transcriptional repressor Rex -
  LLUC11_RS05005 (LLUC11_0961) - 1009114..1009506 (+) 393 Protein_958 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LLUC11_RS05010 (LLUC11_0962) - 1009684..1011591 (+) 1908 WP_003132741.1 ABC-F family ATP-binding cassette domain-containing protein -
  LLUC11_RS05015 (LLUC11_0963) - 1011764..1012621 (+) 858 WP_081199524.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25843.67 Da        Isoelectric Point: 7.4315

>NTDB_id=155960 LLUC11_RS04995 WP_017864419.1 1007472..1008152(+) (radC) [Lactococcus lactis subsp. lactis strain UC11]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLRPSQADKIFTDKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=155960 LLUC11_RS04995 WP_017864419.1 1007472..1008152(+) (radC) [Lactococcus lactis subsp. lactis strain UC11]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTACGACCCAGTCAGGCTGA
TAAAATATTTACTGACAAAATAAAAAAATCTTGTGAGGATGTGGGGATCAATTTTATTGACCATATTATTGTAGGGGCTG
GTAATTATTTTAGTTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(5-80)

RadC-like JAB domain (RadC)

(115-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.495

98.23

0.447
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.541

98.23

0.398