Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMQ28_RS09025 Genome accession   NZ_CP012608
Coordinates   1914886..1915449 (+) Length   187 a.a.
NCBI ID   WP_053579312.1    Uniprot ID   A0A0M4HC12
Organism   Acinetobacter sp. TTH0-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1909886..1920449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS08995 (AMQ28_09000) - 1910728..1911198 (+) 471 WP_228137516.1 helix-turn-helix domain-containing protein -
  AMQ28_RS09000 (AMQ28_09005) - 1911213..1911914 (-) 702 WP_053578120.1 IS1 family transposase -
  AMQ28_RS09005 (AMQ28_09010) - 1911850..1912263 (+) 414 WP_265732756.1 transposase family protein -
  AMQ28_RS09010 (AMQ28_09015) - 1912415..1912954 (-) 540 WP_009391563.1 hypothetical protein -
  AMQ28_RS09015 (AMQ28_09020) - 1912979..1913818 (-) 840 WP_009391605.1 alpha/beta fold hydrolase -
  AMQ28_RS09020 (AMQ28_09025) - 1913911..1914501 (+) 591 WP_009391568.1 TetR/AcrR family transcriptional regulator -
  AMQ28_RS09025 (AMQ28_09030) ssb 1914886..1915449 (+) 564 WP_053579312.1 single-stranded DNA-binding protein Machinery gene
  AMQ28_RS09030 (AMQ28_09035) - 1915581..1915922 (-) 342 WP_053579313.1 hypothetical protein -
  AMQ28_RS09035 (AMQ28_09040) ahpC 1916137..1916700 (+) 564 WP_053579314.1 alkyl hydroperoxide reductase subunit C -
  AMQ28_RS09040 (AMQ28_09045) - 1916888..1917763 (+) 876 WP_053579315.1 pirin family protein -
  AMQ28_RS09045 (AMQ28_09050) - 1918385..1919683 (+) 1299 WP_053579316.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20806.34 Da        Isoelectric Point: 5.2494

>NTDB_id=155762 AMQ28_RS09025 WP_053579312.1 1914886..1915449(+) (ssb) [Acinetobacter sp. TTH0-4]
MSNVILVGTLGKDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEGSLR
TRQWTDQSGQERYTTEIRGEQMQMLDSNNRQQSEQSADNGGYNQPRFNNNQGAANNSGYNNNQNNQGGFNNSQQSGYANN
NPAAFQPKPQSAPAATAPSDLDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=155762 AMQ28_RS09025 WP_053579312.1 1914886..1915449(+) (ssb) [Acinetobacter sp. TTH0-4]
ATGAGTAATGTCATTTTAGTGGGAACTTTAGGAAAAGATCCTGAAACCAAAACTTTTCCAAATGGTGGTTCTCTTACTCA
GTTTTCAATTGCAACGAGCGATTCGTGGACAGATAAAAATACGGGTGAGCGCAAAGAACAGACGGAATGGCACCGTATTG
TATTGCATAATCGCTTAGGTGAAATTGCACAACAATATCTACGTAAAGGTTCTAAAGTATATATTGAAGGTTCATTACGT
ACACGCCAATGGACAGATCAAAGCGGTCAAGAGCGCTACACCACAGAAATTCGTGGTGAACAGATGCAAATGCTAGACAG
CAACAACCGTCAGCAAAGTGAACAGAGTGCGGATAACGGCGGTTATAATCAACCTCGTTTTAATAATAATCAGGGTGCTG
CAAACAACTCGGGTTATAACAACAACCAAAATAATCAAGGCGGTTTTAACAACAGTCAGCAAAGCGGTTATGCCAACAAT
AACCCAGCGGCTTTTCAGCCTAAGCCTCAATCAGCACCTGCGGCGACTGCGCCGAGTGACTTAGATGATGATTTACCATT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4HC12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.485

100

0.513
  ssb Vibrio cholerae strain A1552

43.719

100

0.465
  ssb Neisseria gonorrhoeae MS11

38.22

100

0.39
  ssb Neisseria meningitidis MC58

38.22

100

0.39

Multiple sequence alignment