Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AMQ28_RS08860 | Genome accession | NZ_CP012608 |
| Coordinates | 1888188..1888775 (+) | Length | 195 a.a. |
| NCBI ID | WP_009386623.1 | Uniprot ID | A0AB37TLI7 |
| Organism | Acinetobacter sp. TTH0-4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1888049..1910814 | 1888188..1888775 | within | 0 |
Gene organization within MGE regions
Location: 1888049..1910814
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMQ28_RS08860 (AMQ28_08865) | ssb | 1888188..1888775 (+) | 588 | WP_009386623.1 | single-stranded DNA-binding protein | Machinery gene |
| AMQ28_RS08865 (AMQ28_08870) | - | 1888993..1890165 (+) | 1173 | WP_053579301.1 | tyrosine-type recombinase/integrase | - |
| AMQ28_RS14625 (AMQ28_08875) | - | 1890146..1891096 (+) | 951 | WP_155857495.1 | hypothetical protein | - |
| AMQ28_RS08875 (AMQ28_08880) | - | 1891170..1892378 (+) | 1209 | WP_039624119.1 | IS256 family transposase | - |
| AMQ28_RS08880 (AMQ28_08885) | - | 1892420..1893070 (+) | 651 | WP_228137510.1 | site-specific integrase | - |
| AMQ28_RS08885 (AMQ28_08890) | - | 1893067..1895040 (+) | 1974 | WP_053579302.1 | integrase | - |
| AMQ28_RS08890 (AMQ28_08895) | - | 1895033..1895509 (+) | 477 | WP_053579303.1 | hypothetical protein | - |
| AMQ28_RS08895 (AMQ28_08900) | - | 1895511..1895852 (-) | 342 | WP_081405750.1 | hypothetical protein | - |
| AMQ28_RS14425 | - | 1895989..1897121 (+) | 1133 | WP_228137512.1 | IS3 family transposase | - |
| AMQ28_RS08910 (AMQ28_08915) | - | 1897380..1897586 (+) | 207 | WP_053580288.1 | helix-turn-helix domain-containing protein | - |
| AMQ28_RS14800 | - | 1897703..1898587 (+) | 885 | WP_228137514.1 | hypothetical protein | - |
| AMQ28_RS08930 (AMQ28_08935) | - | 1899762..1900376 (+) | 615 | WP_053579305.1 | hypothetical protein | - |
| AMQ28_RS08945 (AMQ28_08950) | - | 1901878..1902837 (+) | 960 | WP_053579306.1 | hypothetical protein | - |
| AMQ28_RS08950 (AMQ28_08955) | - | 1902782..1903426 (+) | 645 | WP_081405752.1 | hypothetical protein | - |
| AMQ28_RS08960 (AMQ28_08965) | - | 1903535..1904664 (+) | 1130 | WP_155857469.1 | IS3-like element ISAcsp5 family transposase | - |
| AMQ28_RS08970 (AMQ28_08975) | - | 1904705..1905882 (+) | 1178 | WP_155857496.1 | IS3 family transposase | - |
| AMQ28_RS08975 (AMQ28_08980) | - | 1906170..1906490 (+) | 321 | WP_009392826.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| AMQ28_RS08980 (AMQ28_08985) | - | 1906506..1907906 (+) | 1401 | WP_053579309.1 | cytochrome P450 | - |
| AMQ28_RS08985 (AMQ28_08990) | - | 1907935..1909170 (+) | 1236 | WP_053579310.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| AMQ28_RS08990 (AMQ28_08995) | - | 1909199..1909975 (+) | 777 | WP_053579311.1 | thioesterase family protein | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21433.19 Da Isoelectric Point: 6.4830
>NTDB_id=155761 AMQ28_RS08860 WP_009386623.1 1888188..1888775(+) (ssb) [Acinetobacter sp. TTH0-4]
MARGSVNKVILIGSLGKDPETKSFPNGGSLTQFSIATSDSWVDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYI
EGSLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEQGQGGGEFNQPRFNNNQGGYNNNQNQGGYGNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF
MARGSVNKVILIGSLGKDPETKSFPNGGSLTQFSIATSDSWVDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYI
EGSLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEQGQGGGEFNQPRFNNNQGGYNNNQNQGGYGNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF
Nucleotide
Download Length: 588 bp
>NTDB_id=155761 AMQ28_RS08860 WP_009386623.1 1888188..1888775(+) (ssb) [Acinetobacter sp. TTH0-4]
ATGGCTAGAGGTTCGGTTAATAAGGTCATCTTGATTGGTAGTTTAGGAAAAGACCCAGAGACCAAAAGTTTCCCAAATGG
CGGTTCACTTACACAGTTTTCAATAGCTACTAGTGATTCTTGGGTAGATAAAAATACTGGTGAGCGTAAAGAGCAAACGG
AATGGCATCGTATTGTTTTGCATAACCGTTTAGGTGAAATTGCTCAGCAATTTTTACGTAAAGGTTCTAAAGTATATATT
GAGGGGTCATTACGTACCCGTCAGTGGACAGACCAAAATGGTCAAGAGCGTTACACTACTGAAATTCGTGGTGAACAAAT
GCAGATGCTTGACAGCAACCGTCAACAAGGTGAGCAAGGTCAAGGTGGTGGTGAATTTAATCAACCACGTTTTAACAACA
ATCAAGGTGGTTATAATAATAACCAAAACCAAGGCGGCTACGGCAACCAAGGTGGTTATGGCAATAATCAACCGGCTCAA
GGCAATAGCTACGGCAACAATAACCCGGGTGGTTTTGCGCCGAAACAACAGCCTGCACCGACACCAGCACCAGCTGCTGC
AGACTTAGATGACGATCTACCGTTTTGA
ATGGCTAGAGGTTCGGTTAATAAGGTCATCTTGATTGGTAGTTTAGGAAAAGACCCAGAGACCAAAAGTTTCCCAAATGG
CGGTTCACTTACACAGTTTTCAATAGCTACTAGTGATTCTTGGGTAGATAAAAATACTGGTGAGCGTAAAGAGCAAACGG
AATGGCATCGTATTGTTTTGCATAACCGTTTAGGTGAAATTGCTCAGCAATTTTTACGTAAAGGTTCTAAAGTATATATT
GAGGGGTCATTACGTACCCGTCAGTGGACAGACCAAAATGGTCAAGAGCGTTACACTACTGAAATTCGTGGTGAACAAAT
GCAGATGCTTGACAGCAACCGTCAACAAGGTGAGCAAGGTCAAGGTGGTGGTGAATTTAATCAACCACGTTTTAACAACA
ATCAAGGTGGTTATAATAATAACCAAAACCAAGGCGGCTACGGCAACCAAGGTGGTTATGGCAATAATCAACCGGCTCAA
GGCAATAGCTACGGCAACAATAACCCGGGTGGTTTTGCGCCGAAACAACAGCCTGCACCGACACCAGCACCAGCTGCTGC
AGACTTAGATGACGATCTACCGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50.785 |
97.949 |
0.497 |
| ssb | Vibrio cholerae strain A1552 |
45 |
100 |
0.462 |
| ssb | Neisseria meningitidis MC58 |
39.216 |
100 |
0.41 |
| ssb | Neisseria gonorrhoeae MS11 |
39.216 |
100 |
0.41 |