Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NB74_RS01930 | Genome accession | NZ_CP012593 |
| Coordinates | 400024..400527 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain HOU1444-VR | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 395964..422860 | 400024..400527 | within | 0 |
Gene organization within MGE regions
Location: 395964..422860
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB74_RS01900 (AM595_01925) | - | 395964..396809 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| NB74_RS01905 (AM595_01930) | - | 396963..397844 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| NB74_RS01910 (AM595_01935) | - | 397874..398077 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| NB74_RS01915 (AM595_01940) | ychF | 398089..399186 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| NB74_RS01920 (AM595_01945) | - | 399272..399463 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| NB74_RS01925 (AM595_01950) | rpsF | 399707..400003 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| NB74_RS01930 (AM595_01955) | ssbA | 400024..400527 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| NB74_RS01935 (AM595_01960) | rpsR | 400579..400821 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| NB74_RS01940 (AM595_01965) | - | 401060..401960 (-) | 901 | Protein_385 | Abi family protein | - |
| NB74_RS01945 (AM595_01970) | - | 401962..403176 (-) | 1215 | WP_031765313.1 | tyrosine-type recombinase/integrase | - |
| NB74_RS01950 (AM595_01975) | - | 403440..404165 (-) | 726 | WP_000668215.1 | helix-turn-helix domain-containing protein | - |
| NB74_RS01955 (AM595_01980) | - | 404337..404549 (+) | 213 | WP_001245562.1 | helix-turn-helix domain-containing protein | - |
| NB74_RS01960 (AM595_01985) | - | 404550..404822 (+) | 273 | WP_001138300.1 | helix-turn-helix domain-containing protein | - |
| NB74_RS01965 (AM595_01990) | - | 404834..404980 (+) | 147 | WP_000784875.1 | hypothetical protein | - |
| NB74_RS01970 (AM595_01995) | tscA | 404973..405182 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| NB74_RS01975 (AM595_02000) | tscT | 405185..405508 (+) | 324 | WP_001103945.1 | type II toxin-antitoxin system toxin TscT | - |
| NB74_RS01980 (AM595_02005) | - | 405573..406442 (+) | 870 | WP_031765319.1 | primase alpha helix C-terminal domain-containing protein | - |
| NB74_RS01985 (AM595_02010) | - | 406459..407916 (+) | 1458 | WP_031765320.1 | virulence-associated E family protein | - |
| NB74_RS01990 (AM595_02015) | - | 408217..408579 (+) | 363 | WP_031765322.1 | hypothetical protein | - |
| NB74_RS01995 (AM595_02020) | - | 408581..408865 (+) | 285 | WP_000998179.1 | hypothetical protein | - |
| NB74_RS02000 (AM595_02025) | - | 408862..409503 (+) | 642 | WP_031765326.1 | pathogenicity island protein | - |
| NB74_RS02005 (AM595_02030) | - | 410211..410555 (+) | 345 | WP_001288441.1 | hypothetical protein | - |
| NB74_RS02010 (AM595_02035) | - | 410590..411168 (+) | 579 | WP_031769358.1 | hypothetical protein | - |
| NB74_RS02015 (IAQ01_RS01995) | - | 411168..411344 (+) | 177 | WP_001160678.1 | hypothetical protein | - |
| NB74_RS02020 (AM595_02040) | - | 411397..411924 (+) | 528 | WP_031765331.1 | spore coat protein | - |
| NB74_RS02025 (AM595_02045) | - | 411927..412268 (+) | 342 | WP_031769360.1 | hypothetical protein | - |
| NB74_RS02030 (AM595_02050) | - | 412265..412834 (+) | 570 | WP_031765334.1 | terminase small subunit | - |
| NB74_RS02035 (AM595_02055) | tst | 412989..413693 (-) | 705 | WP_001035599.1 | toxic shock syndrome toxin TSST-1 | - |
| NB74_RS02040 (IAQ01_RS02020) | - | 414104..414268 (+) | 165 | WP_153153625.1 | hypothetical protein | - |
| NB74_RS02045 (AM595_02060) | - | 414343..414546 (+) | 204 | Protein_406 | exotoxin beta-grasp domain-containing protein | - |
| NB74_RS02050 (AM595_02065) | - | 414624..415181 (-) | 558 | WP_031765336.1 | DUF4888 domain-containing protein | - |
| NB74_RS02055 (AM595_02070) | - | 415740..416159 (+) | 420 | WP_000273396.1 | hypothetical protein | - |
| NB74_RS02060 (AM595_02075) | - | 416173..417342 (+) | 1170 | WP_001606776.1 | DUF6575 domain-containing protein | - |
| NB74_RS02065 (AM595_02080) | - | 417912..418850 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| NB74_RS02070 (B4373_RS02135) | - | 418889..419602 (-) | 714 | Protein_411 | tyrosine-type recombinase/integrase | - |
| NB74_RS02075 (AM595_02090) | selX | 419808..420419 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| NB74_RS02080 (AM595_02095) | - | 420788..421156 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| NB74_RS02085 (AM595_02100) | - | 421337..421909 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| NB74_RS02090 (AM595_02105) | - | 422046..422309 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| NB74_RS02095 (AM595_02110) | - | 422609..422860 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=155671 NB74_RS01930 WP_000934799.1 400024..400527(+) (ssbA) [Staphylococcus aureus strain HOU1444-VR]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=155671 NB74_RS01930 WP_000934799.1 400024..400527(+) (ssbA) [Staphylococcus aureus strain HOU1444-VR]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |