Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   A8713_RS05220 Genome accession   NZ_CP015849
Coordinates   1211605..1212675 (-) Length   356 a.a.
NCBI ID   WP_064531679.1    Uniprot ID   A0ABV8T9I4
Organism   Streptomyces sp. SAT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1206605..1217675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8713_RS05200 (A8713_05190) - 1207314..1207853 (-) 540 WP_064531671.1 adenine phosphoribosyltransferase -
  A8713_RS05205 (A8713_05195) secF 1207850..1208974 (-) 1125 WP_064531673.1 protein translocase subunit SecF -
  A8713_RS05210 (A8713_05200) secD 1208976..1210799 (-) 1824 WP_064531675.1 protein translocase subunit SecD -
  A8713_RS05215 (A8713_05205) yajC 1210932..1211441 (-) 510 WP_064531677.1 preprotein translocase subunit YajC -
  A8713_RS05220 (A8713_05210) ruvB 1211605..1212675 (-) 1071 WP_064531679.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  A8713_RS05225 (A8713_05215) ruvA 1212733..1213338 (-) 606 WP_064531681.1 Holliday junction branch migration protein RuvA -
  A8713_RS05230 (A8713_05220) ruvC 1213335..1213892 (-) 558 WP_064531683.1 crossover junction endodeoxyribonuclease RuvC -
  A8713_RS05235 (A8713_05225) - 1214001..1214753 (-) 753 WP_064531685.1 YebC/PmpR family DNA-binding transcriptional regulator -
  A8713_RS05240 (A8713_05230) pdxT 1214833..1215444 (-) 612 WP_064531688.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  A8713_RS05245 (A8713_05235) pdxS 1215453..1216367 (-) 915 WP_018570236.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  A8713_RS05250 (A8713_05240) - 1216514..1217056 (-) 543 WP_064531690.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37965.38 Da        Isoelectric Point: 4.8153

>NTDB_id=155255 A8713_RS05220 WP_064531679.1 1211605..1212675(-) (ruvB) [Streptomyces sp. SAT1]
MNWDDTPDTTAAERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVVHRSAQLLDVEIEADGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGMITRDIAAAALAVYEVDARGLDRLDRAVLTALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPGSPGAGNGQQDLFGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=155255 A8713_RS05220 WP_064531679.1 1211605..1212675(-) (ruvB) [Streptomyces sp. SAT1]
GTGAACTGGGACGACACGCCCGACACCACCGCCGCCGAGCGACTGGTGGGCTCTGTCGCCGACCGCGAGGACCAGGCCGT
CGAGGCCGCCCTGCGGCCCAAGGACCTCGGCGAGTTCATCGGCCAGGAGAAGGTCCGCGAACAGCTCGACCTGGTGCTGC
GCGCCGCCCGCGCGCGCGGTGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTCGGCAAGACCACCCTCTCC
ATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCGGGCGACCTCGCCGC
CATCCTGTCCTCGCTCCAGGAGGGCGAGGTGCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TGTACATGGCGATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCGCTCGAACTG
CCCCCCTTCACCCTGGTAGGCGCCACCACCCGGGCCGGACTGCTGCCGCCCCCGCTGCGCGACCGCTTCGGCTTCACCGC
CCACATGGAGTTCTACGAGCCCGCCGAGCTGGAGCGTGTCGTGCACCGTTCGGCGCAACTGCTCGACGTGGAGATCGAGG
CCGACGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCCCGCATCGCCAACCGCCTGCTGCGCCGGGTGCGGGAC
TACGCGCAGGTCAAGGCGGACGGGATGATCACGCGTGACATCGCCGCCGCGGCCCTCGCCGTCTACGAGGTCGACGCCCG
CGGCCTCGACCGCCTGGACCGGGCCGTGCTGACGGCACTGCTCAAGCTGTTCGGCGGCGGCCCGGTGGGCCTGTCGACGC
TGGCGGTGGCGGTGGGGGAGGAGCGTGAGACCGTGGAAGAGGTCGCCGAACCGTTCCTCGTCCGCGAGGGCCTGCTCGCC
CGCACCCCGCGCGGCCGGGTCGCCACCCCGGCCGCCTGGGCGCACCTCGGCCTCACCCCGCCCGGCTCGCCCGGGGCGGG
AAACGGACAACAGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB AAA lid domain (AAA_lid_4)

(192-265)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.319

92.416

0.511
  ruvB Synechocystis sp. PCC 6803

53.822

88.202

0.475
  ruvB Streptococcus pneumoniae TIGR4

53.333

88.483

0.472
  ruvB Streptococcus pneumoniae R6

53.333

88.483

0.472
  ruvB Streptococcus pneumoniae D39

53.333

88.483

0.472
  ruvB Helicobacter pylori 26695

50.314

89.326

0.449

Multiple sequence alignment