Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AK825_RS12415 Genome accession   NZ_CP012533
Coordinates   3037846..3038901 (-) Length   351 a.a.
NCBI ID   WP_068037950.1    Uniprot ID   -
Organism   Psychrobacter sp. P11G5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3032846..3043901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK825_RS12390 (AK825_12380) aroK 3032885..3033409 (-) 525 Protein_2432 shikimate kinase AroK -
  AK825_RS12395 (AK825_12385) pilQ 3033578..3035914 (-) 2337 WP_068037938.1 type IV pilus secretin PilQ -
  AK825_RS12400 (AK825_12390) - 3035942..3036475 (-) 534 WP_149038765.1 pilus assembly protein PilP -
  AK825_RS12405 (AK825_12395) pilO 3036477..3037199 (-) 723 WP_068037944.1 type 4a pilus biogenesis protein PilO -
  AK825_RS12410 (AK825_12400) - 3037196..3037846 (-) 651 WP_068037947.1 PilN domain-containing protein -
  AK825_RS12415 (AK825_12405) comM 3037846..3038901 (-) 1056 WP_068037950.1 pilus assembly protein PilM Machinery gene
  AK825_RS12420 (AK825_12410) - 3039093..3041765 (+) 2673 WP_068037954.1 PBP1A family penicillin-binding protein -
  AK825_RS12425 (AK825_12415) - 3041927..3042448 (-) 522 WP_068037957.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38522.86 Da        Isoelectric Point: 4.4246

>NTDB_id=155018 AK825_RS12415 WP_068037950.1 3037846..3038901(-) (comM) [Psychrobacter sp. P11G5]
MRLLSSKGRHLVGVDICATSVKLVNIRRQQGIFHLKSYGIEGLLPGTVVDKLIVDTEAVGDAIIRLARRCQVAGSDGATA
VSGSAVITKIIDMDRVLSDVEREAQIRLDADQYIPYPLEEVNLDFEVLGPSLVDENLVQVLLAASRSENVDQRVDALTFG
GLKTKIMDIESHAIERAFGLMADNLPNMPELVALVDIGHNQTTLYIAKNGEFVYSREQLFGGLQLTEAIQNRYGLSFEEA
TVNKRERALPDDYYPEILTPFIESTIQQITRSLQFYFSSSQYNSIDHVVLAGGSSSIPGLSSMVEQKLGVPVTVANPFIN
MTIDPYIDNEQLETDAPSLLAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=155018 AK825_RS12415 WP_068037950.1 3037846..3038901(-) (comM) [Psychrobacter sp. P11G5]
GTGAGGCTACTTTCTTCTAAAGGTCGACATTTGGTCGGGGTAGATATCTGCGCCACCTCCGTAAAGCTGGTTAATATACG
GCGTCAGCAAGGAATATTTCATCTTAAGTCATATGGAATCGAAGGACTGCTACCAGGTACAGTCGTTGACAAGCTTATTG
TAGATACTGAAGCAGTTGGTGATGCTATTATTCGCTTAGCAAGACGCTGTCAGGTCGCAGGCAGTGATGGCGCTACCGCT
GTTTCAGGCTCAGCAGTCATTACTAAGATTATTGATATGGATAGGGTGCTAAGCGACGTCGAACGCGAAGCCCAGATACG
CTTAGATGCAGATCAATATATTCCCTATCCATTAGAAGAAGTCAATCTAGACTTTGAAGTGCTTGGTCCCTCGCTAGTTG
ATGAAAATCTAGTTCAAGTTCTGCTGGCCGCCTCACGTTCAGAAAACGTCGATCAGCGCGTCGATGCGCTGACCTTTGGC
GGTCTAAAAACCAAAATTATGGATATTGAATCGCATGCGATAGAGCGGGCGTTTGGTTTGATGGCTGATAACCTACCTAA
TATGCCTGAATTGGTTGCGCTGGTTGATATCGGACACAATCAGACCACTTTATATATTGCCAAAAATGGTGAGTTTGTTT
ATAGCCGTGAACAACTATTTGGTGGGTTACAACTGACAGAAGCCATTCAAAATCGCTATGGCCTGTCGTTCGAAGAGGCC
ACAGTTAATAAACGTGAACGTGCGCTACCTGATGATTATTATCCAGAAATTCTAACACCTTTTATAGAAAGCACTATCCA
ACAAATTACACGCTCTTTGCAATTTTATTTTTCTTCGAGTCAATACAATAGTATTGATCATGTCGTACTTGCTGGCGGCA
GTAGTTCTATTCCAGGCTTATCCAGTATGGTAGAGCAAAAGCTTGGTGTACCTGTCACTGTAGCTAACCCTTTTATCAAT
ATGACTATAGATCCTTATATAGATAATGAGCAATTGGAAACTGATGCCCCAAGCTTGCTAGCTGCCTGTGGCCTTGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.997

100

0.51
  pilM Acinetobacter baumannii D1279779

50.997

100

0.51
  comM Acinetobacter baylyi ADP1

49.573

100

0.496
  pilM Legionella pneumophila strain ERS1305867

39.943

100

0.402

Multiple sequence alignment