Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AK825_RS11245 Genome accession   NZ_CP012533
Coordinates   2768232..2768876 (-) Length   214 a.a.
NCBI ID   WP_068037407.1    Uniprot ID   -
Organism   Psychrobacter sp. P11G5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2763232..2773876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK825_RS11230 (AK825_11220) - 2765383..2766327 (-) 945 WP_068037402.1 type II secretion system protein N -
  AK825_RS11235 (AK825_11225) gspN 2766328..2767131 (-) 804 WP_068037403.1 type II secretion system protein N -
  AK825_RS11240 (AK825_11230) - 2767387..2767710 (-) 324 WP_068037404.1 H-NS histone family protein -
  AK825_RS11245 (AK825_11235) ssb 2768232..2768876 (-) 645 WP_068037407.1 single-stranded DNA-binding protein Machinery gene
  AK825_RS11250 (AK825_11240) - 2768984..2770348 (-) 1365 WP_068037410.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23104.78 Da        Isoelectric Point: 5.2440

>NTDB_id=155015 AK825_RS11245 WP_068037407.1 2768232..2768876(-) (ssb) [Psychrobacter sp. P11G5]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRIALFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDQSGQDRYITEIRAEQMQMLDGTSSGGQDSNNFGGQGSNQNQGGSYGNQGGQSNQNNFGQQANNQPAQQGGY
NQAGGAAAQGSNQNSFNNQNAPAQQNQFNQPTQTPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=155015 AK825_RS11245 WP_068037407.1 2768232..2768876(-) (ssb) [Psychrobacter sp. P11G5]
ATGCGCGGAGTTAATAAAGTTATCATTATCGGTAACCTTGGAGCAGACCCTGAGGCACGTCAATTTAATAATGGCGGTAG
CGTGACCAATATCTCGGTTGCGACGTCAGAGCAATGGACAGATAAGCAAAGCGGTGAAAAAAGAGAAGCGACCGAATGGC
ATCGTATTGCATTATTTAATCGCTTAGGAGAGATTGCCGCGCAGTATCTTCGTAAAGGCAGTAAGGTTTATATTGAAGGT
AGTCTGCGTACCCGTAAATACCAAGATCAAAGCGGACAAGATCGTTACATCACTGAGATTCGTGCTGAGCAAATGCAAAT
GCTCGATGGCACGAGCAGTGGTGGTCAAGATAGCAATAACTTTGGTGGTCAAGGCTCAAATCAAAATCAAGGCGGCAGTT
ACGGTAATCAAGGCGGTCAAAGTAATCAAAACAACTTTGGTCAGCAAGCAAACAATCAGCCAGCTCAGCAAGGTGGTTAT
AATCAAGCTGGCGGTGCGGCAGCTCAAGGCAGCAACCAGAATAGCTTCAATAATCAAAATGCACCGGCTCAACAAAATCA
GTTTAATCAGCCTACTCAAACGCCAGCACAATCAAAACCTACGGCTATGCCAGATGGCCCGGTAGATGATGATATTCCTT
TTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.698

100

0.509
  ssb Vibrio cholerae strain A1552

45.205

100

0.463
  ssb Neisseria meningitidis MC58

40.566

99.065

0.402
  ssb Neisseria gonorrhoeae MS11

40.566

99.065

0.402

Multiple sequence alignment