Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AK823_RS11960 Genome accession   NZ_CP012529
Coordinates   2925340..2926395 (-) Length   351 a.a.
NCBI ID   WP_068329493.1    Uniprot ID   A0A7U4XUL5
Organism   Psychrobacter sp. P2G3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2920340..2931395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK823_RS11935 (AK823_11935) aroK 2920379..2920903 (-) 525 Protein_2356 shikimate kinase AroK -
  AK823_RS11940 (AK823_11940) pilQ 2921072..2923408 (-) 2337 WP_068037938.1 type IV pilus secretin PilQ -
  AK823_RS11945 (AK823_11945) - 2923436..2923969 (-) 534 WP_149031863.1 pilus assembly protein PilP -
  AK823_RS11950 (AK823_11950) pilO 2923971..2924693 (-) 723 WP_068329486.1 type 4a pilus biogenesis protein PilO -
  AK823_RS11955 (AK823_11955) - 2924690..2925340 (-) 651 WP_068329489.1 PilN domain-containing protein -
  AK823_RS11960 (AK823_11960) comM 2925340..2926395 (-) 1056 WP_068329493.1 pilus assembly protein PilM Machinery gene
  AK823_RS11965 (AK823_11965) - 2926587..2929259 (+) 2673 WP_068329496.1 PBP1A family penicillin-binding protein -
  AK823_RS11970 (AK823_11970) - 2929421..2929942 (-) 522 WP_068037957.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38493.82 Da        Isoelectric Point: 4.4096

>NTDB_id=154998 AK823_RS11960 WP_068329493.1 2925340..2926395(-) (comM) [Psychrobacter sp. P2G3]
MRLLSSKGRHLVGVDICATSVKLVNIQRQQGIFHLKSYGIEGLLPGTVVDKLIVDTEAVGDAIIRLARRCQVAGSDGATA
VSGSAVITKIIDMDRVLSDVEREAQIRLDADQYIPYPLEEVNLDFEVLGPSLVDENLVQVLLAASRSENVDQRVDALTFG
GLKTKIMDIESHAIERAFGLMADNLPNMPELVALVDIGHNQTTLYIAKNGEFVYSREQLFGGLQLTEAIQNRYGLSFEEA
TVNKRERALPDDYYPEILTPFIESTIQQITRSLQFYFSSSQYNSIDHVVLAGGSSSIPGLSSMVQQKLGVPVTVANPFIN
MTIDPYIDNEQLETDAPSLLAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=154998 AK823_RS11960 WP_068329493.1 2925340..2926395(-) (comM) [Psychrobacter sp. P2G3]
GTGAGGCTACTTTCTTCTAAAGGTCGACATTTGGTCGGGGTAGATATCTGCGCCACCTCCGTAAAGCTGGTTAATATACA
GCGTCAGCAAGGAATATTTCATCTTAAGTCATATGGAATCGAAGGACTGCTACCAGGTACAGTCGTTGACAAGCTTATTG
TAGATACTGAAGCAGTTGGTGATGCTATTATTCGCTTAGCAAGACGCTGTCAGGTCGCAGGCAGTGATGGCGCTACCGCT
GTTTCAGGCTCAGCAGTCATTACTAAGATTATTGATATGGATAGGGTGCTAAGCGACGTCGAACGCGAAGCCCAGATACG
CTTAGATGCAGATCAATATATTCCCTATCCATTAGAAGAAGTCAATCTAGACTTTGAAGTGCTTGGCCCCTCGCTAGTTG
ATGAAAATCTAGTTCAAGTTCTGCTGGCCGCCTCACGTTCAGAAAACGTCGATCAGCGCGTCGATGCGCTTACCTTTGGT
GGTCTAAAAACCAAAATCATGGATATCGAGTCGCATGCAATAGAGCGGGCGTTTGGTTTGATGGCTGATAACCTACCTAA
TATGCCAGAATTGGTTGCGCTGGTTGATATCGGACACAATCAGACTACTTTATACATTGCCAAAAATGGTGAGTTTGTTT
ATAGCCGTGAACAACTATTTGGTGGGTTACAACTGACAGAAGCCATTCAAAATCGCTATGGCCTGTCGTTCGAAGAGGCC
ACAGTTAATAAACGTGAACGTGCGCTACCTGATGATTATTATCCAGAAATTCTAACACCTTTTATAGAAAGCACTATCCA
ACAAATTACACGCTCTTTGCAATTTTATTTTTCTTCGAGTCAATACAATAGTATTGATCATGTCGTACTTGCTGGCGGCA
GTAGTTCTATTCCAGGCTTATCCAGTATGGTACAGCAAAAGCTTGGTGTACCTGTCACTGTAGCTAACCCTTTTATCAAT
ATGACTATAGATCCTTATATAGATAATGAGCAATTGGAAACTGATGCCCCAAGCTTGCTAGCTGCCTGTGGCCTTGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U4XUL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.282

100

0.513
  pilM Acinetobacter baumannii D1279779

51.282

100

0.513
  comM Acinetobacter baylyi ADP1

49.858

100

0.499
  pilM Legionella pneumophila strain ERS1305867

40.227

100

0.405

Multiple sequence alignment