Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AK823_RS10795 Genome accession   NZ_CP012529
Coordinates   2653068..2653712 (-) Length   214 a.a.
NCBI ID   WP_068037407.1    Uniprot ID   -
Organism   Psychrobacter sp. P2G3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2648068..2658712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK823_RS10780 (AK823_10780) - 2650219..2651163 (-) 945 WP_068329148.1 type II secretion system protein N -
  AK823_RS10785 (AK823_10785) gspN 2651164..2651967 (-) 804 WP_068037403.1 type II secretion system protein N -
  AK823_RS10790 (AK823_10790) - 2652223..2652546 (-) 324 WP_068037404.1 H-NS histone family protein -
  AK823_RS10795 (AK823_10795) ssb 2653068..2653712 (-) 645 WP_068037407.1 single-stranded DNA-binding protein Machinery gene
  AK823_RS10800 (AK823_10800) - 2653820..2655184 (-) 1365 WP_068037410.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23104.78 Da        Isoelectric Point: 5.2440

>NTDB_id=154995 AK823_RS10795 WP_068037407.1 2653068..2653712(-) (ssb) [Psychrobacter sp. P2G3]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRIALFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDQSGQDRYITEIRAEQMQMLDGTSSGGQDSNNFGGQGSNQNQGGSYGNQGGQSNQNNFGQQANNQPAQQGGY
NQAGGAAAQGSNQNSFNNQNAPAQQNQFNQPTQTPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=154995 AK823_RS10795 WP_068037407.1 2653068..2653712(-) (ssb) [Psychrobacter sp. P2G3]
ATGCGCGGAGTTAATAAAGTTATCATTATCGGTAACCTTGGAGCAGACCCTGAGGCACGTCAATTTAATAATGGCGGTAG
CGTGACCAATATCTCGGTTGCGACGTCAGAGCAATGGACAGATAAGCAAAGTGGTGAAAAAAGAGAAGCGACCGAATGGC
ATCGTATTGCATTATTTAATCGCTTAGGAGAGATTGCCGCGCAGTATCTTCGTAAAGGCAGTAAGGTTTATATTGAAGGT
AGTCTGCGTACCCGTAAATACCAAGATCAAAGCGGACAAGATCGTTACATCACTGAGATTCGTGCTGAGCAAATGCAAAT
GCTCGATGGCACGAGCAGTGGTGGTCAAGATAGCAATAACTTTGGTGGTCAAGGCTCAAATCAAAATCAAGGCGGCAGTT
ACGGTAATCAAGGCGGTCAAAGTAATCAAAACAACTTTGGTCAGCAAGCAAACAATCAGCCAGCTCAGCAAGGTGGCTAT
AATCAAGCTGGCGGTGCGGCAGCTCAAGGCAGTAACCAGAATAGCTTCAATAACCAAAATGCACCGGCTCAACAAAATCA
GTTTAATCAGCCTACTCAAACGCCAGCACAATCAAAACCTACGGCTATGCCAGATGGCCCGGTAGATGATGATATTCCTT
TTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.698

100

0.509
  ssb Vibrio cholerae strain A1552

45.205

100

0.463
  ssb Neisseria meningitidis MC58

40.566

99.065

0.402
  ssb Neisseria gonorrhoeae MS11

40.566

99.065

0.402

Multiple sequence alignment